List of papers

2014

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Škaloud, P., Němcová, Y., Pytela, J., Bogdanov, N.I., Bock, C. & Pickinpaugh, S.H. (2014)
Planktochlorella nurekis, gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid green alga carrying significant biotechnological potential.
Fottea 14: 53-62.

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Poulíčková, A., Mazalová, P., Vašut, R.J., Šarhanová, P., Neustupa, J. & Škaloud, P. (2014)
DNA content variation and its significance in the evolution of the genus Micrasterias (Desmidiales, Streptophyta).
Plos ONE 9: e86247.

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Valentova, J.V., Kleisner, K., Havlíček, J. & Neustupa, J. (2014)
Shape differences between the faces of homosexual and heterosexual men.
Archives of Sexual Behavior 43: 353-361.

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Svoboda, P., Kulichová, J. & Šťastný, J. (2014)
Spatial and temporal community structure of desmids on a small spatial scale.
Hydrobiologia 722: 291-303.


2013

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Eliáš, M., Neustupa, J., Pažoutová, M. & Škaloud, P. (2013)
A case of taxonomic inflation in coccoid algae: Ellipsoidion parvum and Neocystis vischeri are conspecific with Neocystis (=Nephrodiella) brevis (Chlorophyta, Trebouxiophyceae).
Phytotaxa 76: 15-27.

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Gaysina, L., Němcová, Y., Škaloud, P., Ševčíková, T. & Eliáš, M. (2013)
Chloropyrula uraliensis gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a new green coccoid alga with a unique ultrastructure, isolated from soil in South Urals.
Journal of Systematics and Evolution 51: 476-484.

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Kaufnerová, V. & Eliáš, M. (2013)
The demise of the genus Scotiellopsis Vinatzer (Chlorophyta).
Nova Hedwigia 97: 415-428.

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Muggia, L., Vančurová, L., Škaloud, P., Peksa, O., Wedin, M. & Grube, M. (2013)
The symbiotic playground of lichen thalli – a highly flexible photobiont association in rock-inhabiting lichens.
FEMS Microbiology Ecology 85:313–323.

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Němcová, Y. & Kreidlová, J. (2013)
Two new species of Mallomonas (Chrysophyceae: Synurales): Mallomonas temonis and Mallomonas divida.
Phytotaxa 87: 11-18.

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Němcová, Y., Kreidlová, J., Pusztai, M. & Neustupa, J. (2013)
Mallomonas pumilio group (Chrysophyceae/Stramenopiles) – a revision based on the scale/scale-case morphology and analysis of scale shape.
Nova Hedwigia, Beiheft 142: 27-49.

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Neustupa, J. (2013)
Patterns of symmetric and asymmetric morphological variation in unicellular green microalgae of the genus Micrasterias (Desmidiales, Viridiplantae).
Fottea 13: 53-63.

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Neustupa, J., Němcová, Y., Veselá, J., Steinová, J. & Škaloud, P. (2013)
Leptochlorella corticola gen. et sp. nov. and Kalinella apyrenoidosa sp. nov.: two novel Chlorella-like green microalgae (Trebouxiophyceae, Chlorophyta) from subaerial habitats.
International Journal of Systematic and Evolutionary Microbiology 63: 377-387.

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Neustupa, J., Němcová, Y., Veselá, J., Steinová, J. & Škaloud, P. (2013)
Parachloroidium gen. nov. (Trebouxiophyceae, Chlorophyta), a novel genus of coccoid green algae from subaerial corticolous biofilms.
Phycologia 52: 411-421.

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Neustupa, J., Veselá, J. & Šťastný, J. (2013)
Differential cell size structure of desmids and diatoms in the phytobenthos of peatlands.
Hydrobiologia 709: 159-171.

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Pichrtová, M., Němcová, Y., Škaloud, P. & Rott, E. (2013)
Silica-scaled chrysophytes from North Tyrol (Austria) including a description of Mallomonas tirolensis sp. nov.
Nova Hedwigia, Beiheft 142: 69-85.

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Pichrtová, M., Remias, D., Lewis, L. A. & Holzinger, A. (2013)
Changes in phenolic compounds and cellular ultrastructure of Arctic and Antarctic strains of Zygnema (Zygnematophyceae, Streptophyta) after exposure to experimentally enhanced UV to PAR ratio.
Microbial Ecology 65: 68-83.

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Poulíčková, A., Bergová, K., Hnilica, R. & Neustupa, J. (2013)
Epibryic diatoms from ombrotrophic mires: diversity, gradients and indicating options
Nova Hedwigia 96: 351-365.

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Škaloud, P. & Rindi, F. (2013)
Ecological differentiation of cryptic species within an asexual protist morphospecies: a case study of filamentous green alga Klebsormidium (Streptophyta).
Journal of Eukaryotic Microbiology 60: 350-362.

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Škaloud, P., Kalina, T., Nemjová, K., De Clerck, O. & Leliaert, F. (2013)
Morphology and phylogenetic position of the freshwater green microalgae Chlorochytrium (Chlorophyceae) and Scotinosphaera (Scotinosphaerales, ord. nov., Ulvophyceae).
Journal of Phycology 49: 115-129.

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Škaloud, P., Kristiansen, J. & Škaloudová, M. (2013)
Developments in the taxonomy of silica-scaled chrysophytes – from morphological and ultrastructural to molecular approaches (review).
Nordic Journal of Botany 31: 385-402.

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Škaloud, P., Nedbalová, L., Elster, J. & Komárek, J. (2013)
A curious occurrence of Hazenia broadyi spec. nova in Antarctica, and the review of the genus Hazenia (Ulotrichales, Chlorophyceae).
Polar Biology 36: 1281-1291.

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Škaloud, P., Škaloudová, M., Pichrtová, M., Němcová, Y., Kreidlová, J. & Pusztai, M. (2013)
www.chrysophytes.eu – a database on distribution and ecology of silica-scaled chrysophytes in Europe.
Nova Hedwigia, Beiheft 142: 141-146.

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Škaloudová, M. & Škaloud, P. (2013)
A new species of Chrysosphaerella (Chrysophyceae: Chromulinales), Chrysosphaerella rotundata, sp. nov., from Finland.
Phytotaxa 130: 34-42.

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Šťastný, J., Škaloud, P., Langenbach, D., Nemjová, K. & Neustupa, J. (2013)
Polyphasic evaluation of Xanthidium antilopaeum and Xanthidium cristatum (Zygnematophyceae, Streptophyta) species complex.
Journal of Phycology 49: 401-416.

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Steinová, J., Stenroos, S., Grube, M. & Škaloud, P. (2013)
Genetic diversity and species delimitation of the zeorin-containing red-fruited Cladonia species (lichenized Ascomycota) assessed with ITS rDNA and β-tubulin data.
The Lichenologist 45: 665-684.

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Urbánková, P. & Veselá, J. (2013)
DNA-barcoding: A case study in the diatom genus Frustulia (Bacillariophyceae).
Nova Hedwigia, Beiheft 142: 147-162.

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Van de Vijver, B., Moravcová, A., Kusber, W.H. & Neustupa, J. (2013)
Analysis of the type material of Pinnularia divergentissima (Grunow in Van Heurck) Cleve (Bacillariophyceae).
Fottea 13: 1-14.

2012

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Přibyl, P., Eliáš, M., Cepák, V., Lukavský, J. & Kaštánek, P. (2012)
Zoosporogenesis, morphology, ultrastructure, pigment composition, and phylogenetic position of Trachydiscus minutus (Eustigmatophyceae, Heterokontophyta).
Journal of Phycology 48: 231-242.

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Neustupa, J., Černá, K. & Šťastný, J. (2012)
Spatio-temporal community structure of peat bog benthic desmids on a microscale.
Aquatic Ecology 46: 229-239.

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Němcová, Y. & Pichrtová, M. (2012)
Shape dynamics of silica scales (Chrysophyceae, Stramenopiles) associated with pH.
Fottea 12: 281-291.

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Němcová, Y., Kreidlová, J., Kosová, A. & Neustupa, J. (2012)
Lakes and pools of Aquitaine region (France) - a biodiversity hotspot of Synurales in Europe.
Nova Hedwigia 95: 1-24.

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Škaloud, P., Kynčlová, A., Benada, O., Kofroňová, O. & Škaloudová, M. (2012)
Toward a revision of the genus Synura, section Petersenianae (Synurophyceae, Heterokontophyta): morphological characterization of six pseudo-cryptic species.
Phycologia 51: 303-329.

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Škaloud, P., Šťastný, J., Nemjová, K., Mazalová, P., Poulíčková, A. & Neustupa, J. (2012)
Molecular phylogeny of baculiform desmid taxa (Zygnematophyceae).
Plant Systematics and Evolution 298: 1281-1292.

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Šťastný, J. & Kouwets, F.A.C. (2012)
New and remarkable desmids (Zygnematophyceae, Streptophyta) from Europe: taxonomical notes based on LM and SEM observations.
Fottea 12: 293-313.

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Veselá, J., Urbánková, P., Černá, K. & Neustupa, J. (2012)
Ecological variation within traditional diatom morphospecies: diversity of Frustulia rhomboides sensu lato (Bacillariophyceae) in European freshwater habitats.
Phycologia 51: 552-561.

2011

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Banks, J.A., Nishiyama, T., Hasebe M. + 100 additional authors incl. Elias, M. (2011)
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
Science 332: 960-963.

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Němcová, Y., Bulant, P. & Kristiansen, J. (2011)
Mallomonas solea-ferrea and Mallomonas siveri (Chrysophyceae/Synurophyceae): two new taxa from the
Western Cape (South Africa).
Nova Hedwigia 93: 375-384.

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Němcová, Y., Eliáš, M., Škaloud, P., Hodač, L. & Neustupa, J. (2011)
Jenufa, gen. nov.: a new genus of coccoid green algae (Chlorophyceae, incertae sedis) previously recorded by environmental sequencing.
Journal of Phycology 47: 928-938.

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Nemjová, K., Neustupa, J., Šťastný, J., Škaloud, P. & Veselá, J. (2011)
Species concept and morphological differentiation of strains traditionally assigned to Micrasterias
truncata
.
Phycological Research 59: 208-220.

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Neustupa, J., Černá, K. & Šťastný, J. (2011)
The effects of aperiodic desiccation on the diversity of benthic desmid assemblages in a lowland peat bog.
Biodiversity and Conservation 20: 1695-1711.

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Neustupa, J., Eliáš, M., Škaloud, P., Němcová, Y. & Šejnohová, L. (2011)
Xylochloris irregularis, gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccoid green alga.
Phycologia 50: 57-66.

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Neustupa, J., Šťastný, J., Nemjová, K., Mazalová, P., Goodyer, E., Poulíčková, A. & Škaloud, P. (2011)
A novel, combined approach to assessing species delimitation and biogeography within the well-known desmid species Micrasterias fimbriata and M. rotata (Desmidiales, Steptophyta).
Hydrobiologia 667: 223-239.

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Peksa, O. & Škaloud, P. (2011)
Do photobionts influence the ecology of lichens? A case study of environmental preferences in symbiotic green alga Asterochloris (Trebouxiophyceae).
Molecular Ecology 20: 3936-3948.

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Pichrtová, M. & Němcová, Y. (2011)
Effect of temperature on size and shape of silica scales in Synura petersenii and Mallomonas tonsurata
(Stramenopiles).
Hydrobiologia 673: 1-11.

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Pichrtová, M., Janatková, K. & Němcová, Y. (2011)
Silica-scaled chrysophytes from Abisko (Swedish Lapland).
Nordic Journal of Botany 29: 112-118.

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Škaloud, P., Nemjová, K., Veselá, J., Černá, K. & Neustupa, J. (2011)
A multilocus phylogeny of the desmid genus Micrasterias (Streptophyta): Evidence for the accelerated rate of morphological evolution in protists.
Molecular Phylogenetics and Evolution 61: 933-943.

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Sucgang, C. et al. incl. Eliáš, M. (2011)
Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum.
Genome Biology 12: R20.

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Svoboda, D., Peksa, O. & Veselá, J. (2011)
Analysis of the species composition of epiphytic lichens in Central European oak forests.
Preslia 83: 129-144.

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Veselá, J., Škaloud, P., Urbánková, P., Škaloudová, M. & Kalina, T. (2011)
The CAUP image database.
Fottea 11: 313-316.

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Vlahou, G., Eliáš, M., von Kleist-Retzov, J.C., Wiesner, R.J. & Rivero, F. (2011)
The Ras related GTPase Miro is not required for mitochondrial transport in Dictyostelium discoideum.
European Journal of Cell Biology 90: 342-355.

2010

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Bačkor, M., Peksa, O., Škaloud, P. & Bačkorová, M. (2010)
Photobiont diversity in lichens from metal-rich substrata based on ITS rDNA sequences.
Ecotoxicology and Environmental Safety 73: 603-612.

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Černá, K. (2010)
Small-scale spatial variation of benthic algal assemblages in a peat bog.
Limnologica 40: 315-321.

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Černá, K. & Neustupa, J. (2010)
The pH-related morphological variations of two acidophilic species of Desmidiales (Viridiplantae) isolated from a lowland peat bog, Czech Republic.
Aquatic Ecology 44: 409-419.

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Cock, J.M., Sterck, L., Rouzé, P., Scornet, D. + 70 additional authors incl. Elias, M. (2010)
The Ectocarpus genome and the independent evolution of multicellularity in brown algae.
Nature 465: 617-621.

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Elias, M. (2010)
Patterns and processes in the evolution of the eukaryotic endomembrane system.
Molecular Membrane Biology 27: 469-489.

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Eliáš, M., Němcová, Y., Škaloud, P., Neustupa, J., Kaufnerová, V. & Šejnohová, L. (2010)
Hylodesmus singaporensis gen. et sp. nov., a new autosporic subaerial green alga (Scenedesmaceae, Chlorophyta) from Singapore.
International Journal of Systematic and Evolutionary Microbiology 60: 1224-1235.

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Kynčlová, A., Škaloud, P. & Škaloudová, M. (2010)
Unveiling hidden diversity in the Synura petersenii species complex (Synurophyceae, Heterokontophyta).
Nova Hedwigia, Beiheft 136: 283-298.

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Němcová, Y. (2010)
Diversity and ecology of silica-scaled chrysophytes (Synurophyceae, Chrysophyceae) in the National Nature Monument Swamp and Brehynsky Pond, Czech Republic
Cryptogamie, Algologie 31: 229-243.

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Němcová, Y., Neustupa, J., Kvíderová, J. & Řezáčová-Škaloudová, M. (2010)
Morphological plasticity of silica scales of Synura echinulata (Synurophyceae) in crossed gradients of light and temperature – a geometric morphometric approach.
Nova Hedwigia, Beiheft 136: 21-32.

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Neustupa, J. & Škaloud, P. (2010)
Diversity of subaerial algae and cyanobacteria growing on bark and wood in the lowland tropical forests of Singapore.
Plant Ecology and Evolution 143: 51-62.

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Neustupa, J., Řezáčová-Škaloudová, M. & Němcová, Y. (2010)
Shape variation of the silica scales of Mallomonas kalinae (Mallomonadales, Synurophyceae) in relation to their position on the cell body.
Nova Hedwigia, Beiheft 136: 33-42.

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Neustupa, J., Škaloud, P. & Šťastný, J. (2010)
The molecular phylogenetic and geometric morphometric evaluation of Micrasterias crux-melitensis / M. radians species complex.
Journal of Phycology 46: 703-714.

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Pažoutová, M., Škaloud, P. & Nemjová, K. (2010)
Phylogenetic position of Ooplanctella planoconvexa gen. et comb. nova and Echinocoleum elegans(Oocystaceae, Trebouxiophyceae, Chlorophyta).
Fottea 10: 75-82.

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Poulíčková, A., Veselá, J., Neustupa, J. & Škaloud, P. (2010)
Pseudocryptic diversity versus cosmopolitanism in diatoms: a case study on Navicula cryptocephala Kütz. (Bacillariophyceae) and morphologically similar taxa.
Protist 161: 353-369.

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Řezáčová-Škaloudová, M., Neustupa, J. & Němcová, Y. (2010)
Effect of temperature on the variability of silicate structures in Mallomonas kalinae and Synura curtispina (Synurophyceae).
Nova Hedwigia, Beiheft 136: 55-70.

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Savriama, Y., Neustupa, J. & Klingenberg, C.P. (2010)
Geometric morphometrics of symmetry and allometry in Micrasterias rotata (Zygnemophyceae, Viridiplantae).
Nova Hedwigia, Beiheft 136: 43-54.

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Skaloud, P. & Peksa, O. (2010)
Evolutionary inferences based on ITS rDNA and actin sequences reveal extensive diversity of the common lichen alga Asterochloris (Trebouxiophyceae, Chlorophyta).
Molecular Phylogenetics and Evolution 54: 36-46.

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Šťastný, J. (2010)
Desmids (Conjugatophyceae, Viridiplantae) from the Czech Republic; new and rare taxa, distribution, ecology.
Fottea 10: 1-74.

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Svoboda, D., Peksa, O. & Veselá, J. (2010)
Epiphytic lichen diversity in Central European oak forests: Assessment of the effects of natural environmental factors and human influences.
Environmental Pollution 158: 812-819.

2009

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Elias, M. & Archibald, J.M. (2009)
Sizing up the genomic footprint of endosymbiosis
BioEssays 31: 1273-1279.

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Elias, M. & Archibald, J.M. (2009)
The RJL family of small GTPases is an ancient eukaryotic invention probably functionally associated with the flagellar apparatus.
Gene 442: 63-72.

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Eliáš, M. & Neustupa, J. (2009)
Pseudomarvania, gen. nov. (Chlorophyta, Trebouxiophyceae), a new genus for “budding” subaerial green algae Marvania aerophytica Neustupa et Šejnohová and Stichococcus ampulliformis Handa.
Fottea 9: 169-177.

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Elias, M., Patron, N.J. & Keeling, P.J. (2009)
The RAB family GTPase Rab1A from Plasmodium falciparum defines a unique paralog shared by chromalveolates and Rhizaria.
Journal of Eukaryotic Microbiology 56: 348-356.

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Fránková, M., Poulíčková, A., Neustupa, J., Pichrtová, M. & Marvan, P. (2009)
Geometric morphometrics - a sensitive method to distinguish diatom morphospecies: a case study on the sympatric populations of Reimeria sinuata and Gomphonema tergestinum (Bacillariophyceae) from the River Bečva, Czech Republic
Nova Hedwigia 88: 81-95.

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Janatková, K. & Němcová, Y. (2009)
Silica-scaled chrysophytes of Southern Bohemian water bodies, including Mallomonas conspersa Dürrschmidt with occurrence so far reported from Japan and New Zealand
Fottea 9: 93-99.

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Ma, L.J., Ibrahim, A.S., Skory, C., Grabherr, M.G., Burger, G., Butler, M., Elias, M. et al. (2009)
Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication.
PLoS Genetics 5: e1000549.

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Machová-Černá, K., Neustupa, J. (2009)
Spatial distribution of algal assemblages in a temperate lowland peat bog.
International Review of Hydrobiology 94: 40-56.

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Němcová, Y. & Pichrtová, M. (2009)
The rare species Synura lapponica (Synurophyceae) new to the Czech Republic, local vs. global diversity in colonial synurophytes.
Biologia 64: 1070-1075.

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Nemjová, K. & Kaufnerová, V. (2009)
New reports of Vaucheria species (Vaucheriales, Xanthophyceae, Heterokontophyta) from the Czech Republic.
Fottea 9: 53-57.

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Neustupa, J., Černá, K. & Šťastný, J. (2009)
Diversity and morphological disparity of desmid assemblages in Central European peatlands.
Hydrobiologia 630: 243-256.

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Neustupa, J., Němcová, Y., Eliáš, M. & Škaloud, P. (2009)
Kalinella bambusicola gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid Chlorella-like subaerial alga from Southeast Asia.
Phycological Research 57: 159-169.

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Pichrtová, M. & Veselá, J. (2009)
The silica-scaled chrysophytes of the Elbe Sandstone Region, Czech Republic.
Fottea 9: 101-106.

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Píšková, A., Grygar, T., Veselá, J. & Oberhänsli, H. (2009)
Diatom assemblage variations in the Aral Sea core C2/2004 over the past two millennia.
Fottea 9: 333-342.

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Poulíčková, A., Neustupa, J., Špačková, J. & Škaloud, P. (2009)
Distribution of epipelic diatoms in artificial fishponds along environmental and spatial gradients.
Hydrobiologia 624: 81-90.

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Prášil, O., Bína, D., Medová, H., Řeháková, K., Zapomělová, E., Veselá, J. & Oren, A. (2009)
Emission spectroscopy and kinetic fluorometry studies of the phototrophic microbial communities along the salinity gradient in the solar saltern evaporation ponds of Eilat, Israel.
Aquatic Microbial Ecology 56: 285-296.

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Řeháková, K., Zapomělová, E., Prášil, O., Veselá, J., Medová, H. & Oren, A. (2009)
Composition changes of phototrophic microbial communities along the salinity gradient in the solar saltern evaporation ponds of Eilat, Israel.
Hydrobiologia 636: 77-88.

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Škaloud, P. (2009)
Species composition and diversity of aero-terrestrial algae and cyanobacteria of the Boreč Hill ventaroles.
Fottea 9: 65-80.

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Šťastný, J. (2009)
The desmids of the Swamp Nature Reserve (North Bohemia, Czech Republic) and a small neighbouring bog: species composition and ecological condition of both sites.
Fottea 9: 135-148.

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Veselá, J. (2009)
Spatial heterogeneity and ecology of algal communities in an ephemeral sandstone stream in the Bohemian Switzerland National Park, Czech Republic.
Nova Hedwigia 88: 531-547.

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Veselá, J. & Johansen, J. (2009)
The diatom flora of ephemeral headwater streams in the Elbsandsteingebirge region of the Czech Republic.
Diatom Research 24: 443-477.

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Veselá, J., Neustupa, J., Pichrtová, M. & Poulíčková A. (2009)
Morphometric study of Navicula morphospecies (Bacillariophyta) with respect to diatom life cycle.
Fottea 9: 307-316.

2008

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Eliáš, M. (2008)
The guanine nucleotide exchange factors Sec2 and PRONE: Candidate synapomorphies for the Opisthokonta and the Archaeplastida.
Molecular Biology and Evolution 25: 1526-1529.

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Eliáš, M. & Novotný, M. (2008)
cpRAS: a novel circularly permuted RAS-like GTPase domain with a highly scattered phylogenetic distribution.
Biology Direct 3: 21.

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Eliáš, M., Neustupa, J. & Škaloud, P. (2008)
Elliptochloris bilobata var. corticola var. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccal green alga.
Biologia 63: 787-794.
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Hašler, P., Štěpánková, J., Špačková, J., Neustupa, J., Kitner, M., Hekera, P., Veselá, J., Burian, J. & Poulíčková, A. (2008)
Epipelic cyanobacteria and algae: a case study from Czech ponds.
Fottea
8(2): 133-146.
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Machová, K., Elster, J. & Adamec, L. (2008)
Xanthophyceaen assemblages during winter–spring flood: autecology and ecophysiology of Tribonema fonticolum and T. monochloron.
Hydrobiologia
600: 155-168.
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Němcová, Y., Nováková, S. & Řezáčová-Škaloudová, M. (2008)
Synura obesa sp. nov. (Synurophyceae) and other silica-scaled chrysophytes from Abisko (Swedish Lapland).
Nova Hedwigia 86: 243-254.

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Neustupa, J. & Nemjová, K. (2008)
Quantitative assessment of morphological variation of six Pseudococcomyxa strains by geometric morphometric descriptors.
Fottea 8(2): 111-116.

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Neustupa, J. & Škaloud, P. (2008)
Diversity of subaerial algae and cyanobacteria on tree bark in tropical mountain habitats.
Biologia 63: 802-808.
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Neustupa, J., Šťastný, J. & Hodač, L. (2008)
Temperature-related phenotypic plasticity in the green microalga Micrasterias rotata.
Aquatic Microbial Ecology
51: 77-86.

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Peksa, O. & Škaloud, P. (2008)
Changes in chloroplast structure in lichenized algae.
Symbiosis 46: 153-160.

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Pichrtová, M. & Němcová, Y. (2008)
Geometric morphometric analyses of silica-scale variation in four Mallomonas species (Synurophyceae, Stramenopiles).
Nordic Journal of Botany 26: 77-82.

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Škaloud, P. & Peksa, O. (2008)
Comparative study of chloroplast morphology and ontogeny in Asterochloris (Trebouxiophyceae, Chlorophyta).
Biologia 63: 869-876.

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Šťastný, J. (2008)
Desmids from ephemeral pools and aerophytic habitats from the Czech Republic.
Biologia 63: 884-890.

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Šťastný, J. (2008)
Krásivky Přírodních rezervací "Chvojnov" a "Na Oklice".
Acta Rerum Naturalium 4: 13-16.

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Šťastný, J. & Lenzenweger, R. (2008)
Ein Nachtrag zur Zieralgenflora (Desmidiales, Zygnematophyceae) der Schwemm bei Walchsee in Nordtirol (Österreich).
Phyton 48: 37-49.

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Šťastný, J. & Neustupa, J. (2008)
Cosmarium gauthierae sp. nov. (Conjugatophyceae, Desmidiales) from an ephemeral pool in South-West Macedonia.
Cryptogamie Algologie 29: 255-260.

2007

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Merchant, S.S., Prochnik, S.E., Vallon, O., Harris, E.H., Karpowicz, S.J., Witman, G.B. + 117 additional authors incl. Eliáš, M. (2007)
The Chlamydomonas genome reveals the evolution of key animal and plant functions.
Science 318(5848): 245-250.

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Neustupa, J., Eliáš, M. & Šejnohová, L. (2007)
A taxonomic study of two Stichococcus species (Trebouxiophyceae, Chlorophyta) with a starch-enveloped pyrenoid.
Nova Hedwigia 84: 51-63.
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Neustupa, J. & Němcová, Y. (2007)
A geometric morphometric study of the variation in scales of Mallomonas striata (Synurophyceae, Heterokontophyta).
Phycologia 46(2): 123-130.
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Neustupa, J. & Řezáčová, M. (2007)
The genus Mallomonas (Mallomonadales, Synurophyceae) in several Southeast Asian urban water bodies - the biogeographic implications.
Nova Hedwigia 84: 249-259.
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Neustupa, J. & Škaloud, P. (2007)
Geometric morphometrics and qualitative patterns in the morphological variation of five species of Micrasterias (Zygnemophyceae, Viridiplantae).
Preslia 79: 401-417.
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Nováková, S. (2007)
Structure and dynamics of the algal flora in subalpine mires in the Krkonoše Mountains (Giant Mountains; Czech Republic).
Nova Hedwigia 84: 441-458.
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Pichrtová, M., Řezáčová-Škaloudová, M. & Škaloud, P. (2007)
The silica-scaled chrysophytes of the Czech-Moravian Highlands.
Fottea 7(1): 43-48.
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Řezáčová, M. & Neustupa, J. (2007)
Distribution of the genus Mallomonas
(Synurophyceae) - Ubiquitous dispersal in microorganisms evaluated.
Protist 158: 29-37.
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Šťastný, J. (2007)
Die Desmidiaceenflora von Pískovny Cep (Südböhmen)
Novitates Botanicae Universitatis Carolinae
18: 53-62.

2006
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Neustupa, J. & Šťastný, J. (2006)
The geometric morphometric study of Central European species of the genus Micrasterias (Zygnematophyceae, Viridiplantae).
Preslia 78: 253-263.
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Řezáčová, M. (2006)
Mallomonas kalinae (Synurophyceae), a new species of alga from northern Bohemia, Czech Republic.
Preslia 78: 353-358.
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Škaloud, P. (2006)
Variation and taxonomic significance of some morphological features in European strains of Klebsormidium (Klebsormidiophyceae, Streptophyta).
Nova Hedwigia 83(3-4): 533-550.
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Škaloud, P., Řezáčová, M. & Ellegaard, M. (2006)
Spatial distribution of phytoplankton in Spring 2004 along a transect in the eastern part of the North Sea.
Journal of Oceanography 62(5): 717-729.
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Veselá, J. (2006)
Benthic algal communities and their ecology in sandstone periodically desiccated brook in National Park Bohemian Switzerland (Czech Republic).
Czech Phycology 6: 99-110.

2005
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Kalina, T. (2005)
New trends in the megasystems of Eukaryote (Review).
Czech Phycology 5: 37-42.
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Neustupa, J. (2005)
Investigations on the genus Phycopeltis (Trentepohliaceae, Chlorophyta) from South-East Asia, including the description of two new species.
Cryptogamie Algologie 26: 229-242.
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Neustupa, J. (2005)
Phenotypic plasticity of microalgal cultures in culture collections: a geometric morphometric appproach.
Oceanological and Hydrobiological Studies 34(3): 97-107.
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Neustupa, J. & Hodač, L. (2005)
Changes in shape of the coenobial cells of an experimental strain of Pediastrum duplex var. duplex (Chlorophyta) reared at different pHs.
Preslia 77: 439-452.
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Nováková, S. (2005)
Pseudocarteria corcontica
, a new quadriflagellate species (Volvocales).
Preslia 77(4): 453–457.
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Řezáčová, M. & Škaloud, P. (2005)
Silica-scaled chrysophytes of Ireland. With an appendix: Geographic variation of scale shape of Mallomonas caudata.
Nova Hedwigia, Beiheft 128: 101-124.
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Škaloud, P., Neustupa, J., Radochová, B., Kubínová, L. (2005)
Confocal microscopy of chloroplast morphology and ontogeny in three strains of Dictyochloropsis (Trebouxiophyceae, Chlorophyta).
Phycologia 44: 261-269.

2004
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Neustupa, J. (2004)
Two new aerophytic species of the genus Podohedra Düringer (Chlorophyceae).
Archiv für Hydrobiologie/ Algological Studies 112: 1-16.
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Neustupa, J. & Škaloud, P. (2004)
Contribution to the knowledge of soil algae of two abandoned industrial sedimentation basins in Eastern Bohemia.
In: Kovář, P. (ed.), Natural recovery of man-made deposits in landscape (Biotic interactions and ore/ash-slag artificial ecosystems). - pp. 188-192, Academia, Praha.

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Nováková, S. (2004)
Spatial heterogeneity of the algal flora in subalpine mires in the eastern Krkonoše Mts (Giant Mountains; Czech Republic).
Archiv für Hydrobiologie/ Algological Studies 112: 23-37.
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Nováková, S., Němcová, Y., Neustupa, J., Řezáčová, M. & Šejnohová, L. (2004)
Silica-scaled chrysophytes in acid peat bogs of Bohemian Switzerland (Czech Republic) and Saxonian Switzerland (Germany).
Nova Hedwigia 78: 507-515.
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Nováková, S., Řezáčová, M., Němcová, Y., Neustupa, J. & Kalina, T. (2004)
Mallomonas actinoloma
var. maramuresensis (Synurophyceae) - a new species in algal flora of the Czech Republic.
Novitates Botanicae Universitatis Carolinae 17: 7-10.

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Nováková, S., Walne, P.L., Kalina, T. (2004)
Contribution to the desmid flora of the Southern Appalachian Mountains (USA).
Archiv für Hydrobiologie/ Algological Studies 112: 95-104.
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Řezáčová, M., Neustupa, J. & Šejnohová, L. (2004)
Five species of Mallomonas (Synurophyceae) new to the algal flora of the Czech Republic.
Preslia 76: 175-181.
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Řezáčová, M. & Škaloud, P. (2004)
A contribution to the knowledge of the silica-scaled chrysophytes in eastern Hungary.
Czech Phycology 4: 67-73.
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Škaloud, P. & Radochová, B. (2004)
Confocal microscopy of the green-algal chloroplast.
Czech Phycology 4: 183-190.

2003

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Němcová, Y. (2003)
Detection of cell wall structural polysaccharides by cellulase-gold and chitinase-gold complexes.
Czech Phycology 3: 3-36.

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Němcová, Y., Neustupa, J., Kalina, T. & Nováková, S. (2003)
Silica-scaled chrysophytes of the Šumava National Park and the Třeboňsko UNESCO Biosphere Reserve (Southern Bohemia, Czech Republic).
Nordic Journal of Botany 22: 375-383.

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Němcová, Y., Neustupa, J., Kalina, T. & Nováková, S. (2003)
Silica-scaled chrysophytes of the Czech Republic.
Acta Universitatis Carolinae - Biologica 47: 285-346.
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Neustupa, J. (2003)
The genus Phycopeltis (Trentepohliales, Chlorophyta) from tropical Southeast Asia.
Nova Hedwigia 76: 487-505.
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Neustupa, J. & Albrechtová, J. (2003)
Aerial algae on spruce needles in the Krušné hory Mts., Czech Republic.
Czech Phycology 3: 161-167.

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Neustupa, J. & Šejnohová, L. (2003)
Marvania aerophytica
sp. nov., a new subaerial green alga.
Biologia 58: 503-507.

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Nováková, S. (2003)
Algoflóra rašelinišť Českosaského Švýcarska.
Czech Phycology 3: 71-78.

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Nováková, S. (2003)
Ecological distribution patterns of desmid species in subalpine regions of the Krkonoše Mountains (Czech Republic).
Biologia 58: 697-700.
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Pfannenschmid, F., Wimmer, V.C., Rios, R.M., Geimer, S., Haller, K., Němcová, Y. & Mages, W. (2003)
Chlamydomonas DIP13 and human NA14: a new class of proteins associated with microtubule structures is involved in cell division.
Journal of Cell Science 116(8): 1449-1462.

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Šejnohová, L. (2003)
Sinice a řasy slepých ramen Vltavy v I. zóně Šumavského Národního parku "Vltavský luh".
Czech Phycology 3: 53-70
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Šejnohová, L., Škaloud, P., Neustupa, J., Nováková, S., Řezáčová, M. & Ošlejšková, L. (2003)
Algae and cyanoprokaryotic species from peat bog, streams, ponds and aerial biotopes in the region of South Šumava Mts.
Czech Phycology 3: 41-52.

2002

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Neustupa, J. (2002)
An easy method for light microscopic distinguishing of xanthophycean and eustigmatophycean strains.
Czech Phycology 2: 43-46.

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Neustupa, J., Nováková, S., Šejnohová, L., Škaloud, P. & Řezáčová, M. (2002)
Algae from the aquatic, peat bog and aerial biotopes in the tributary of Křemelná river in Šumava National Park.
Czech Phycology 2: 47-61.

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Nováková, S. (2002)
Algal flora of subalpine peat bog pools in the Krkonoše Mts.
Preslia 74: 45-56.
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Nováková, S. (2002)
Pseudodendromonas vlkii - poutník po systému.
Czech Phycology 2: 33-37.

2001

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Kalina, T. (2001)
Původ chloroplastů a zařazení řasových oddělení do systému organismů
Czech Phycology 1: 1-4.

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Kalina, T., Walne, P. & Houk, V. (2001)
Floristic notes on plankton algae of Norris Lake (Tennessee, USA).
Preslia 73: 121-126.

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Němcová, Y., Kalina, T., Neustupa, J. & Nováková, S. (2001)
Silica-scaled chrysophytes of the Krkonoše Mountains (Czech Republic).
Archiv für Hydrobiologie/ Algological Studies 101: 97-108.
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Neustupa, J. (2001)
Soil algae from marlstone-substratum based biotopes in the Nature park Džbán (Central Bohemia, Czech Republic) with special attention to the natural treeless localities.
Archiv für Hydrobiologie/ Algological Studies 101: 109-120.
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Neustupa, J. (2001)
Aerofytické řasy tropického deštného lesa - zkušenosti z Malajského poloostrova.
Czech Phycology 1: 31-35.

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Neustupa, J. & Němcová, Y. (2001)
Morphological and taxonomic study of three terrestrial eustigmatophycean species.
Nova Hedwigia, Beiheft 123: 373-386.

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Neustupa, J., Němcová, Y. & Kalina, T. (2001)
Silica-scaled Chrysophytes of Southern Bohemia and Českomoravská vrchovina (Czech-Moravian Highlands, Czech Republic).
Archiv für Hydrobiologie/ Algological Studies 102: 23-34.

2000

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Kalina, T., Němcová, Y. & Neustupa, J. (2000)
Silica-scaled chrysophytes of the Czech Republic 1. District Česká Lípa (Nothern Bohemia) and part of the Central Bohemia.
Archiv für Hydrobiologie/ Algological Studies 96: 29-47.

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Němcová, Y. & Kalina, T. (2000)
Cell wall development, microfibril and pyrenoid structure in type strains of Chlorella vulgaris, C. kessleri, C. sorokiniana compared with C. luteoviridis (Trebouxiophyceae, Chlorophyta).
Archiv für Hydrobiologie/ Algological Studies 100: 95-105.

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Němcová, Y., Kalina, T. & Neustupa, J. (2000)
Chrysomonády a slunivky s křemičitými šupinami montánních a subalpinských rašelinišť Krkonoš.
Opera Corcontica 37: 334-340.

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Němcová, Y., Kalina, T., Neustupa, J. & Nováková, S. (2000)
Scale-bearing chrysophyte Mallomonas calceolus Bradley a new record from Czech Republic.
Novitates Botanicae Universitatis Carolinae 13: 7-11.

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Neustupa, J., Němcová, Y. & Kalina, T. (2000)
Mallomonas pumilio
var. pumilio - a new species in algal flora of Czech Republic.
Novitates Botanicae Universitatis Carolinae 14: 7-11.

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Nováková, S. (2000)
Řasy krkonošských rašelinišť.
Opera Corcontica 37: 341-346.
1999

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Němcová, Y. (1999)
The fine structure of the xanthophycean alga Bumilleriopsis filiformis.
Acta Universitatis Carolinae - Biologica 43: 67-76.
1998

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Neustupa, J. (1998)
Prasiola crispa (Lightfoot) Meneghini in King`s preserve in Prague.
Novitates Botanicae Universitatis Carolinae 12: 35-39.



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