Workshop Population genetics of polyploids

Population genetics of polyploids, from theory to practice

ForBio course, Drøbak, Norway, 2.-7.12. 2018

Filip Kolář, Patrick Meirmans, Marc Stift, Olivier Hardy, Camille Roux, and Patrick Monnahan.

New Google group forum

Tutorial with questions for Days 1-4 and the same Tutorial with answers

(disclaimer: these materials are for non-commercial use only)

 

Day 0 – Introduction into R
Getting to grips with using R to similate diploid and polyploid populations

Day 1 – Population genetics with diploids and polyploids and in mixed situations
Genetic diversity, HW, analogues of F-statistics - Clustering analysis of simulated diploid and tetraploid pops

 

Day 2 – Estimating selfing rates in polyploids
Single vs. paired heterozygosity - Double reduction - Estimating selfing rates with mixed ploidy

 

Day 3 – ABC to analyse population genomic data
Model selection of evolutionary scenarios (polyploid origins and mode of inheritance)

 

Day 4 – Selection in diploids vs polyploids
Responses to selection, Selective sweeps, Rate of adaptation vs rate of fixation, Linked selection 

 

Day 5 – Project presentation

 

For full-size image see here