Jiųí Neustupa

Geometric morphometrics of symmetry; phenotypic plasticity of unicellular organisms

[main model systems: desmids (Desmidiales, Zygnematophyceae), Halimeda (Bryopsidales, Ulvophyceae), flowers of vascular plants]

NEUSTUPA, J.; WOODARD, K.; KULICHOVÁ, J. & NĢMCOVÁ, Y. (2024): Effects of summer desiccation on desmid microflora of ombrogenous pools in central-European mountain peat bogs. - Preslia 96: 209-221. [PDF]

NEUSTUPA, J. & WOODARD, K. (2024): The effects of temperature on plasticity, shape symmetry and seasonal variation in the freshwater benthic green microalga Micrasterias thomasiana. - Aquatic Ecology 58: 601-615. [PDF]

NEUSTUPA, J. & WOODARD, K. (2023): Spatial integration of cellular shapes in green microalgae with complex morphology, the genus Micrasterias (Desmidiales, Zygnematophyceae). - Symmetry 15: 1700. accessible online

NEUSTUPA, J.; STASTNY, J. & WOODARD, K. (2023): Ecological monitoring of disturbed mountain peatlands: an analysis based on desmids. - Biodiversity and Conservation 32: 2671-2691. accessible online

NEMCOVA, Y.; ORLANDO-BONACA, M. & NEUSTUPA, J. (2023): Halimeda tuna (Bryopsidales, Ulvophyceae) calcification on the depth transect in the northern Adriatic Sea; carbonate production on the microscale of individual segments. - PeerJ 11, e15061.

NEUSTUPA, J. & NĢMCOVÁ, Y. (2022): Geometric morphometrics shows a close relationship between the shape features, position on thalli, and CaCO₃ content of segments in Halimeda tuna (Bryopsidales, Ulvophyceae). - Hydrobiologia 849: 2581-2594.

HOŠKOVÁ, K.; NEUSTUPA, J.; POKORNÝ, P. & POKORNÁ, A. (2022): Phylogenetic, ecological and intraindividual variability patterns in grass phytolith shape. - Annals of Botany 129: 303-314.

WOODARD, K. & NEUSTUPA, J. (2022): Geometric morphometrics of bilateral asymmetry in Eunotia bilunaris (Eunotiales, Bacillariophyceae) as a tool for the quantitative assessment of teratogenic deviations in frustule shapes. - Symmetry 14: 42. [PDF]

NEUSTUPA, J. & WOODARD, K. (2021): Male sterility significantly elevates shape variation and fluctuating asymmetry of zygomorphic corolla in gynodioecious Glechoma hederacea (Lamiaceae). - AoB Plants 13: 3, plab013. [PDF]

HOŠKOVÁ, K.; POKORNÁ, A.; NEUSTUPA, J. & POKORNÝ, P. (2021): Inter- and intraspecific variation in grass phytolith shape and size: a geometric morphometrics perspective. - Annals of Botany 127: 191-202. [PDF]

NEUSTUPA, J. (2020): Gynodioecy in the common spindle tree (Euonymus europaeus L.) involves differences in the asymmetry of corolla shapes between sexually differentiated flowers. - PeerJ 8: e8571. [PDF]

NEUSTUPA, J. & NĢMCOVÁ, Y. (2020): Morphometric analysis of surface utricles in Halimeda tuna (Bryopsidales, Ulvophyceae) reveals variation in their size and symmetry within individual segments. - Symmetry 12: 1271. [PDF]

NEUSTUPA, J. & WOODARD, K. (2020): Geometric morphometrics reveals increased symmetric shape variation and asymmetry related to lead exposure in the freshwater green alga Micrasterias compereana. - Ecological Indicators 111: 106054. [PDF - journal webpage]

SCHNABLOVÁ, R.; NEUSTUPA, J.; WOODARD, K.; KLIMEŠOVÁ, J. & HERBEN, T. (2020): Disentangling phylogenetic and functional components of shape variation among shoot apical meristems of a wide range of herbaceous angiosperms. - American Journal of Botany 107: 20-30. [PDF]

FONSECA, B.M.; FEIJÓ L.M. & NEUSTUPA, J. (2019): Habitat preferences of Micrasterias arcuata (Desmidiales, Viridiplantae) in wetlands from central Brazil: an allometric study. - Hydrobiologia 842: 143-156. [PDF]

KULICHOVÁ, J.; NEUSTUPA, J.; VRBOVÁ, K.; LEVKOV, Z. & KOPALOVÁ, K. (2019): Asymmetry in Luticola species. - Diatom Research 34: 67-74. [PDF]

VILCHIS, M.I.; NEUSTUPA, J.; DRECKMANN, K.; QUINTANAR, A. & SENTÍES, A. (2019): Discrimination of the species of the Crassiphycus corneus / C. usneoides complex (Gracilariaceae, Rhodophyta) through geometric morphometric analysis. - Nova Hedwigia 109: 291-301. [PDF]

NEUSTUPA, J. (2018): Algologie a protistologie na Nģmecké univerzitģ v Praze v meziválečném období II. Ernst Georg Pringsheim a Institut pro rostlinnou fyziologii. - Dģjiny vģd a techniky 51/3: 169-196. [PDF]

NEUSTUPA, J. (2018): Algologie a protistologie na Nģmecké univerzitģ v Praze v meziválečném období I. Adolf Pascher a jeho odkaz. - Dģjiny vģd a techniky 50/4: 234-258. [PDF]

NEUSTUPA, J. & Š¨ASTNÝ, J. (2018): Symmetry breaking of the cellular lobes closely relates to phylogenetic structure within green microalgae of the Micrasterias lineage (Zygnematophyceae). - PeerJ 6: e6098. [PDF]

NEUSTUPA, J. & NĢMCOVÁ, Y. (2018): Morphological allometry constrains symmetric shape variation, but not asymmetry, of Halimeda tuna (Bryopsidales, Ulvophyceae) segments. - Plos One 13: e0206492. [PDF]

PROCHÁZKOVÁ, K.; NĢMCOVÁ, Y. & NEUSTUPA, J. (2018): Phyllosiphon duini sp. nov. (Trebouxiophyceae, Chlorophyta), a species isolated from a corticolous phototrophic biofilm. - Cryptogamie Algologie 39: 23-34. [PDF]

ELIÁŠ, M.; AMARAL, R.; FAWLEY, K.P.; FAWLEY, M.W.; NĢMCOVÁ, Y.; NEUSTUPA, J.; PŲIBYL, P.; SANTOS, L.M.A & ŠEVČÍKOVÁ, T. (2017): Eustigmatophyceae. In: ARCHIBALD, J.M.; SIMPSON, A.G.B.; SLAMOVITS, C. (eds.), Handbook of Protists, pp. 1-39, Springer. [PDF]

NEUSTUPA, J. (2017): Asymmetry and integration of cellular morphology in Micrasterias compereana. - BMC Evolutionary Biology 17: 1. [PDF - journal website]

ŠTIFTEROVÁ, A. & NEUSTUPA, J. (2017): Small-scale variation of corticolous microalgal covers: Effects of microhabitat, season, and space. - Phycological Research 65: 299-311. [PDF - journal website] [PDF - final accepted version]

MUTINOVÁ, P.T.; NEUSTUPA, J.; BEVILACQUA, S. & TERLIZZI, A. (2016): Host specificity of epiphytic diatom (Bacillariophyceae) and desmid (Desmidiales) communities. - Aquatic Ecology 50: 697-709. [PDF]

NĢMCOVÁ, Y.; PUSZTAI, M.; ŠKALOUDOVÁ, M. & NEUSTUPA, J. (2016): Silica-scaled chrysophytes (Stramenopiles, Ochrophyta) along a salinity gradient: a case study from the Gulf of Bothnia western shore (northern Europe). - Hydrobiologia 764: 187-197. [PDF]

NEUSTUPA, J. (2016): Static allometry of unicellular green algae: scaling of cellular surface area and volume in the genus Micrasterias (Desmidiales) - Journal of Evolutionary Biology 29: 292-305. [PDF - journal website] [PDF - final accepted version]

POULÍČKOVÁ, A.; NEUSTUPA, J.; HAŠLER, P.; TOMANEC, O. & COX, E.J. (2016): A new species, Navicula lothargeitleri sp. nov., within the Navicula cryptocephala complex (Bacillariophyceae). - Phytotaxa 273: 23-33. [PDF - journal website]

PROCHÁZKOVÁ, K.; NĢMCOVÁ, Y. & NEUSTUPA, J. (2016): Phyllosiphon ari sp. nov. (Watanabea clade, Trebouxiophyceae), a new parasitic species isolated from leaves of Arum italicum (Araceae). - Phytotaxa 283: 143-154. [PDF]

WOODARD, K. & NEUSTUPA, J. (2016): Morphometric asymmetry of frustule outlines in the pennate diatom Luticola poulickovae (Bacillariophyceae). - Symmetry 8: 150, doi:10.3390/sym8120150. [PDF]

WOODARD, K.; KULICHOVÁ, J.; POLÁČKOVÁ, T. & NEUSTUPA, J. (2016): Morphometric allometry of representatives of three naviculoid genera throughout their life cycle. - Diatom Research 31: 231-242. [PDF - journal website] [PDF - final accepted version]

NEUSTUPA, J. (2015): Chlorophyta (excl. Ulvophyceae). In: FREY, W. (ed.), Syllabus of Plant Families, Part 2/1, Photoautotrophic eukaryotic Algae, pp. 191-246, Schweizerbart Verl.

NEUSTUPA, J. (2015): Streptophyta p.p. (excl. Charophyceae). In: FREY, W. (ed.), Syllabus of Plant Families, Part 2/1, Photoautotrophic eukaryotic Algae, pp. 282-293, Schweizerbart Verl.

NEUSTUPA, J. (2015): Trentepohliales. In: FREY, W. (ed.), Syllabus of Plant Families, Part 2/1, Photoautotrophic eukaryotic Algae, pp. 261-264, Schweizerbart Verl.

NOVÁKOVÁ, R. & NEUSTUPA, J. (2015): Microalgal biofilms on common yew needles in relation to anthropogenic air pollution in urban Prague, Czech Republic. - Science of the Total Environment 508: 7-12. [PDF]

PROCHÁZKOVÁ, K.; NĢMCOVÁ, Y. & NEUSTUPA, J. (2015): A new species Jenufa aeroterrestrica (Chlorophyceae incertae sedis, Viridiplantae), described from Europe. - Preslia 87: 403-416. [PDF]

PROCHÁZKOVÁ, K.; NĢMCOVÁ, Y.; KULICHOVÁ, J. & NEUSTUPA, J. (2015): Morphology and phylogeny of parasitic and free-living members of the genus Phyllosiphon (Trebouxiophyceae, Chlorophyta). - Nova Hedwigia 101: 501-518. [PDF - upon request]

ŠTIFTEROVÁ, A. & NEUSTUPA, J. (2015): Community structure of corticolous microalgae within a single forest stand: evaluating the effects of bark surface pH and tree species. - Fottea 15: 113-122. [PDF]

KULICHOVÁ, J.; ŠKALOUD, P. & NEUSTUPA, J. (2014): Molecular diversity of green corticolous microalgae from two submediterranean European localities. - European Journal of Phycology 49: 345-355. [PDF]

NEUSTUPA, J.; Š¨ASTNÝ, J. & ŠKALOUD, P. (2014): Splitting of Micrasterias fimbriata (Desmidiales, Viridiplantae) into two monophyletic species and description of Micrasterias compereana sp. nov. - Plant Ecology and Evolution 147: 405-411. [PDF]

POULÍČKOVÁ, A.; MAZALOVÁ, P.; VAŠUT, R.J.; ŠARHANOVÁ, P.; NEUSTUPA, J. & ŠKALOUD, P. (2014): DNA content variation and its significance in the evolution of the genus Micrasterias (Desmidiales, Streptophyta). - PLOS One 9: e86247. [PDF]

VARELLA-VALENTOVÁ, J.; KLEISNER, K.; HAVLÍČEK, J. & NEUSTUPA, J. (2014): Shape differences between the faces of homosexual and heterosexual men. - Arch. Sex. Behav. 43: 353-361 [PDF]

ELIÁŠ, M.; NEUSTUPA, J.; PAˇOUTOVÁ, M. & ŠKALOUD, P. (2013): A case of taxonomic inflation in coccoid algae: Ellipsoidion parvum and Neocystis vischeri are conspecific with Neocystis (=Nephrodiella) brevis (Chlorophyta, Trebouxiophyceae). - Phytotaxa 76: 15-27 [PDF]

NĢMCOVÁ, Y.; KREIDLOVÁ, J.; PUSZTAI, M. & NEUSTUPA, J. (2013): Mallomonas pumilio group (Chrysophyceae/Stramenopiles) - a revision based on the scale/scale-case morphology and analysis of scale shape. - Nova Hedwigia Beih. 142: 27-49. [PDF - upon request]

NEUSTUPA, J. (2013): Patterns of symmetric and asymmetric morphological variation in unicellular green microalgae of the genus Micrasterias (Desmidiales, Viridiplantae). - Fottea 13: 53-63. [PDF]

NEUSTUPA, J.; NĢMCOVÁ, Y.; VESELÁ, J.; STEINOVÁ, J. & ŠKALOUD, P. (2013): Parachloroidium gen. nov. (Trebouxiophyceae, Chlorophyta), a novel genus of coccoid green algae from subaerial corticolous biofilms. - Phycologia 52: 411-421. [PDF]

NEUSTUPA, J.; NĢMCOVÁ, Y.; VESELÁ, J.; STEINOVÁ, J. & ŠKALOUD, P. (2013): Leptochlorella corticola gen. et sp. nov. and Kalinella apyrenoidosa sp. nov.: two new Chlorella-like green microalgae (Trebouxiophyceae, Chlorophyta) from subaerial habitats. - International Journal of Systematic and Eukaryotic Microbiology 63: 377-387. [PDF]

NEUSTUPA, J. & ŠTIFTEROVÁ, A. (2013): Distribution patterns of subaerial corticolous microalgae in two European regions. - Plant Ecology and Evolution 146: 279-289. [PDF]

NEUSTUPA, J.; VESELÁ, J. & Š¨ASTNÝ, J. (2013): Differential cell size dynamics of desmids and diatoms in the phytobenthos of peatlands. - Hydrobiologia 709: 159-171. [PDF]

POULÍČKOVÁ, A.; BERGOVÁ, K.; HNILICA, R. & NEUSTUPA, J. (2013): Epibryic diatoms from ombrotrophic mires: diversity, gradients and indicating options. - Nova Hedwigia 96: 351-365. [PDF - upon request]

Š¨ASTNÝ, J.; ŠKALOUD, P.; LANGENBACH, D.; NEMJOVÁ, K. & NEUSTUPA, J. (2013): Polyphasic evaluation of Xanthidium antilopaeum and X. cristatum (Zygnematophyceae, Streptophyta) species complex. - Journal of Phycology 49: 401-416. [PDF]

VAN DE VIJVER, B.; MORAVCOVÁ, A.; KUSBER, W-H. & NEUSTUPA, J. (2013): Analysis of the type material of Pinnularia divergentissima (Bacillariophyceae). - Fottea 13: 1-14. [PDF]

NĢMCOVÁ, Y.; KREIDLOVÁ, J.; KOSOVÁ, A. & NEUSTUPA, J. (2012): Lakes and pools of Aquitaine region (France) - a biodiversity hotspot of Synurales in Europe. - Nova Hedwigia 95: 1-24. [PDF - upon request]

NEUSTUPA, J.; ČERNÁ, K. & Š¨ASTNÝ, J. (2012): Spatio-temporal community structure of peat bog benthic desmids on a microscale. - Aquatic Ecology 46: 229-239. [PDF + supplementary material]

ŠKALOUD, P.; Š¨ASTNÝ, J.; NEMJOVÁ, K.; MAZALOVÁ, P.; POULÍČKOVÁ, A. & NEUSTUPA, J. (2012): Molecular phylogeny of baculiform desmid taxa (Zygnematophyceae). - Plant Systematics and Evolution 298: 1281-1292. [PDF]

VESELÁ, J.; URBÁNKOVÁ, P.; ČERNÁ, K. & NEUSTUPA J. (2012): Ecological variation within traditional diatom morphospecies; diversity of Frustulia rhomboides sensu lato (Bacillariophyceae) in European freshwater habitats. - Phycologia 51: 552-561. [PDF]

NĢMCOVÁ, Y.; ELIÁŠ, M.; ŠKALOUD, P.; HODAČ, L. & NEUSTUPA, J. (2011): Jenufa gen. nov.: a new genus of coccoid green algae (Chlorophyceae, incertae sedis) previously recorded by environmental sequencing. - Journal of Phycology 47: 928-938. [PDF]

NEMJOVÁ, K.; NEUSTUPA, J.; Š¨ASTNÝ, J.; ŠKALOUD, P. & VESELÁ, J. (2011): Species concept and morphological differentiation of strains traditionally assigned to Micrasterias truncata. - Phycological Research 59: 208-220. [PDF]

NEUSTUPA, J.; ČERNÁ, K. & Š¨ASTNÝ, J. (2011): The effects of aperiodic desiccation on the diversity of benthic desmid assemblages in a lowland peat bog. - Biodiversity and Conservation 20: 1695-1711. [PDF + supplementary material]

Neustupa, J.; Eliáš, M.; Škaloud, P.; Nģmcová, Y. & Šejnohová, L. (2011): Xylochloris irregularis gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccoid green alga. - Phycologia 50: 57-66. [PDF]

NEUSTUPA, J.; Š¨ASTNÝ, J.; NEMJOVÁ, K.; MAZALOVÁ, P.; GOODYER, E.; POULÍČKOVÁ, A. & ŠKALOUD, P. (2011): A novel, combined approach to assessing species delimitation and biogeography within the well-known desmid species Micrasterias fimbriata and M. rotata (Desmidiales, Steptophyta). - Hydrobiologia 667: 223–239. [PDF + supplementary material]

ŠKALOUD, P.; NEMJOVÁ, K.; VESELÁ, J.; ČERNÁ, K. & NEUSTUPA, J. (2011): A multilocus phylogeny of the desmid genus Micrasterias (Streptophyta): evidence for the accelerated rate of morphological evolution in protists. - Molecular Phylogenetics and Evolution 61: 933-943. [PDF]

ČERNÁ, K. & NEUSTUPA, J. (2010): The pH-related morphological variations of two acidophilic species of Desmidiales (Viridiplantae) isolated from a lowland peat bog, Czech Republic. - Aquatic Ecology 44: 409-419. [PDF]

ELIÁŠ, M.; NĢMCOVÁ, Y.; ŠKALOUD, P. ; NEUSTUPA, J.; KAUFNEROVÁ, V. & ŠEJNOHOVÁ, L. (2010): Hylodesmus singaporensis gen. et sp. nov., a new autosporic subaerial green alga (Scenedesmaceae, Chlorophyta) from Singapore. - International Journal of Systematic and Eukaryotic Microbiology 60: 1224-1235. [PDF]

NĢMCOVÁ, Y.; NEUSTUPA, J.; KVÍDEROVÁ, J & ŲEZÁČOVÁ-ŠKALOUDOVÁ, M. (2010): Morphological plasticity of silica scales of Synura echinulata (Synurophyceae) in crossed gradients of light and temperature - a geometric morphometric approach. - Nova Hedwigia Beih. 136: 21-32. [PDF - upon request]

NEUSTUPA, J.; ŲEZÁČOVÁ-ŠKALOUDOVÁ, M. & NĢMCOVÁ, Y. (2010): Shape variation of the silica-scales of Mallomonas kalinae (Mallomonadales, Synurophyceae) in relation to their position on the cell body. - Nova Hedwigia Beih. 136: 33-42. [PDF - upon request]

NEUSTUPA, J. & ŠKALOUD, P. (2010): Diversity of subaerial algae and cyanobacteria growing on bark and wood in the lowland tropical forests of Singapore. - Plant Ecology and Evolution 143: 51-62. [PDF]

NEUSTUPA, J.; ŠKALOUD, P. & Š¨ASTNÝ, J. (2010): The molecular phylogenetic and geometric morphometric evaluation of Micrasterias crux-melitensis / M. radians species complex. – Journal of Phycology 46: 703-714. [PDF]

POULÍČKOVÁ, A.; VESELÁ, J.; NEUSTUPA, J. & ŠKALOUD, P. (2010): Pseudocryptic diversity versus cosmopolitanism in diatoms: a case study on Navicula cryptocephala Kütz. (Bacillariophyceae) and morphologically similar taxa. - Protist 161: 353-369. [PDF]

SAVRIAMA, Y.; NEUSTUPA, J. & KLINGENBERG, C. (2010): Geometric morphometrics of symmetry and allometry in Micrasterias rotata (Zygnemophyceae, Viridiplantae). - Nova Hedwigia Beih. 136: 43-54 [PDF - see at Klingenberg lab page]

ELIÁŠ, M. & NEUSTUPA, J. (2009): Pseudomarvania gen. nov. (Chlorophyta, Trebouxiophyceae), a new genus for “budding” subaerial green algae Marvania aerophytica Neustupa & Šejnohová and Stichococcus ampulliformis Handa. - Fottea 9: 169-177. [PDF]

FRÁNKOVÁ, M.; POULÍČKOVÁ, A.; NEUSTUPA, J.; PICHRTOVÁ, M. & MARVAN, P. (2009): Geometric morphometrics – a sensitive method for diatom morphospecies distinguishing: a case study on the sympatric populations of Reimeria sinuata and Gomphonema tergestinum (Bacillariophyceae) from the River Bečva, Czech Republic. - Nova Hedwigia 88: 81-95.

MACHOVÁ-ČERNÁ, K. & NEUSTUPA, J. (2009): Spatial patterns of algal assemblages in a peatbog ditch. - International Review of Hydrobiology 94: 40-56. [PDF]

NEUSTUPA, J.; ČERNÁ, K. & Š¨ASTNÝ, J. (2009): Diversity and morphological disparity of desmid assemblages in Central European peatlands. - Hydrobiologia 630: 243-256. [PDF] [supplementary material]

NEUSTUPA, J.; NĢMCOVÁ, Y; ELIÁŠ, M. & ŠKALOUD, P. (2009): Kalinella bambusicola gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid Chlorella-like subaerial alga from Southeast Asia. - Phycological Research 57: 159-169. [PDF]

POULÍČKOVÁ, A.; NEUSTUPA, J.; ŠPAČKOVÁ, J. & ŠKALOUD, P. (2009): Distribution of epipelic diatoms in artificial fishponds along environmental and spatial gradients. - Hydrobiologia 624: 81-90. [PDF]

VESELÁ, J.; NEUSTUPA, J.; PICHRTOVÁ, M. & POULÍČKOVÁ, A. (2009): Morphometric study of Navicula morphospecies (Baccilariophyta) with respect to diatom life cycle. - Fottea 9: 307-316. [PDF]

ELIÁŠ, M.; NEUSTUPA, J. & ŠKALOUD, P. (2008): Elliptochloris bilobata var. corticola var. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccal green alga. - Biologia 63: 787-794. [PDF]

Hašler, P.; Štģpánková, J.; Špačková, J.; Neustupa, J.; Kitner, M.; Hekera, P.; Veselá, J.; Burian, J. & Poulíčková, A. (2008): Epipelic cyanobacteria and algae: a case study from Czech ponds. - Fottea 8: 133-146. [PDF]

NEUSTUPA, J.; Š¨ASTNÝ, J. & HODAČ, J. (2008): Temperature-related phenotypic plasticity in the green microalga Micrasterias rotata. - Aquatic Microbial Ecology 51: 77-86. [PDF]

NEUSTUPA, J. & ŠKALOUD, P. (2008): Diversity of subaerial algae and cyanobacteria on tree bark in tropical mountain habitats. - Biologia 63: 802-808. [PDF]

NEUSTUPA, J. & NEMJOVÁ, K. (2008): Quantitative assessment of morphological variation of six Pseudococcomyxa strains by geometric morphometric descriptors. - Fottea 8: 111-116. [PDF]

Š¨ASTNÝ, J. & NEUSTUPA, J. (2008): Cosmarium gauthierae sp. nov. (Conjugatophyceae, Desmidiales) from an ephemeral pool in South-West Macedonia. - Cryptogamie Algologie 29: 255-260. [PDF]

NEUSTUPA, J.; ELIÁŠ, M. & ŠEJNOHOVÁ, L. (2007): A taxonomic study of two Stichococcus species (Trebouxiophyceae, Chlorophyta) with a starch-enveloped pyrenoid. - Nova Hedwigia 84: 51-63. [PDF - upon request]

NEUSTUPA, J. & ŲEZÁČOVÁ, M. (2007): The genus Mallomonas (Mallomonadales, Synurophyceae) in several Southeast Asian urban water bodies - the biogeographic implications. - Nova Hedwigia 84: 249-259. [PDF]

NEUSTUPA, J. & ŠKALOUD, P. (2007): Geometric morphometrics and qualitative patterns in the morphological variation of five species of Micrasterias (Zygnemophyceae, Viridiplantae). - Preslia 79: 401-417. [PDF]

NEUSTUPA, J. & NĢMCOVÁ, Y. (2007): A geometric morphometric study of the variation in scales of Mallomonas striata (Synurophyceae, Heterokontophyta). - Phycologia 46: 123-130. [PDF]

ŲEZÁČOVÁ, M. & NEUSTUPA, J. (2007): Distribution of the genus Mallomonas (Synurophyceae) - ubiquitous dispersal in microorganisms evaluated. - Protist 158: 29-37. [PDF]

NEUSTUPA, J. & Š¨ASTNÝ, J. (2006): The geometric morphometric study of Central European species of the genus Micrasterias (Zygnematophyceae, Viridiplantae). - Preslia 78: 253-263. [PDF]

NEUSTUPA, J. (2005): Phenotypic plasticity of microalgal cultures in culture collections: a geometric morphometric appproach. - Oceanol. Hydrobiol. Stud. 34: 97-107. [PDF]

NEUSTUPA, J. (2005): Investigations on the genus Phycopeltis (Trentepohliaceae, Chlorophyta) from South-East Asia, including the description of two new species. - Cryptogamie Algologie 26: 229-242. [PDF]

NEUSTUPA, J. & HODAČ, L. (2005): Changes in shape of the coenobial cells of an experimental strain of Pediastrum duplex var.duplex (Chlorophyta) reared at different pHs. - Preslia 77: 439-452. [PDF]

ŠKALOUD, P.; NEUSTUPA, J.; RADOCHOVÁ, B. & KUBÍNOVÁ, L. (2005): Confocal microscopy of chloroplast morphology and ontogeny in three strains of Dictyochloropsis (Trebouxiophyceae, Chlorophyta). - Phycologia 44: 261-269. [PDF]

NEUSTUPA, J. (2004): Two new aerophytic species of the genus Podohedra DÜRINGER (Chlorophyceae) – Arch. Hydrobiol./Algological Studies 112: 1-16. [PDF]

NEUSTUPA, J. & ŠKALOUD, P. (2004): Contribution to the knowledge of soil algae of two abandoned industrial sedimentation basins in Eastern Bohemia. – In: KOVÁŲ P. (ed.) - Natural recovery of man-made deposits in landscape (Biotic interactions and ore/ash-slag artificial ecosystems). - p. 188-192, Academia, Praha. [PDF]

NOVÁKOVÁ, S.; NĢMCOVÁ, Y.; NEUSTUPA, J.; ŲEZÁČOVÁ, M. & ŠEJNOHOVÁ, L. (2004): Silica-scaled chrysophytes in acid peat bogs of Bohemian Switzerland (Czech Republic) and Saxonian Switzerland (Germany). - Nova Hedwigia 78: 507-515. [PDF]

NOVÁKOVÁ, S.; ŲEZÁČOVÁ, M.; NĢMCOVÁ, Y.; NEUSTUPA, J. & KALINA, T. (2004): Mallomonas actinoloma var. maramuresensis (Synurophyceae) - a new species in algal flora of the Czech Republic. - Novit. Bot. Univ. Carol. 17: 7-10. [PDF]

ŲEZÁČOVÁ, M.; NEUSTUPA, J. & ŠEJNOHOVÁ, L. (2004): Five species of Mallomonas (Synurophyceae) new to the algal flora of the Czech Republic. - Preslia 76: 175-181. [PDF]

STIBRAL, K.; KOMÁREK, S. & NEUSTUPA, J. (2004): Pųírodní estetika Josefa Velenovského. – Estetika 40: 117-126. [in Czech]

NĢMCOVÁ, Y.; NEUSTUPA, J.; NOVÁKOVÁ, S. & KALINA, T. (2003): Silica scaled chrysophytes of the Czech Republic. – Acta Univ. Carol. 47: 285-346.

NEUSTUPA, J. (2003): The genus Phycopeltis (Trentepohliales, Chlorophyta) in tropical Southeast Asia. – Nova Hedwigia 76: 487-505. [PDF]

NEUSTUPA, J. & ALBRECHTOVÁ, J. (2003): Aerial algae on spruce needles in the Krušné Hory Mts., Czech Republic. - Czech Phycol. 3: 161–168. [PDF]

NEUSTUPA, J. & ŠEJNOHOVÁ, L. (2003): Marvania aerophytica sp. nov. – a new aerial tropical green alga. – Biologia 58: 503-507. [PDF]

ŠEJNOHOVÁ, L.; ŠKALOUD, P.; NEUSTUPA, J.; NOVÁKOVÁ, S.; ŲEZÁČOVÁ, M. & OŠLEJŠKOVÁ, L. (2003): Algae and cyanoprokaryotic species from peat bog, streams, ponds and aerial biotopes in the region of South Šumava Mts. – Czech Phycol. 3: 41–52. [PDF]

NĢMCOVÁ, Y.; NEUSTUPA, J.; KALINA, T. & NOVÁKOVÁ, S. (2002): Silica-scaled chrysophytes of the Šumava National Park and the Tųeboņsko UNESCO Biosphere Reserve (Southern Bohemia, Czech Republic). – Nordic Journal of Botany 22: 375–393. [PDF]

NEUSTUPA J. (2002): An easy method for light microscopic distinguishing of xanthophycean and eustigmatophycean strains. – Czech Phycol. 2: 43–46. [PDF]

NEUSTUPA, J.; NOVÁKOVÁ, S.; ŠEJNOHOVÁ, L.; ŠKALOUD, P. & ŲEZÁČOVÁ, M. (2002): Algae from aquatic, peat bog and aerial biotopes in the catchment area of the River Kųemelná in Šumava National Park. – Czech Phycol. 2: 47–61. [PDF]

NĢMCOVÁ, Y.; KALINA, T. & NEUSTUPA, J. (2001): Chrysomonády a slunivky s kųemitými šupinami alpinských a subalpinských rašeliniš¯ Krkonoš.- Opera Corcontica 37: 334–341. [in Czech]

NĢMCOVÁ, Y.; KALINA, T.; NEUSTUPA, J. & NOVÁKOVÁ, S. (2001): Silica-scaled chrysophytes of the Krkonoše Mountains (Czech Republic). - Algological Studies 101: 97–108.

NEUSTUPA, J. (2001): Soil algae from marlstone-substratum based biotopes in the Nature park D˛bán (Central Bohemia, Czech Republic) with special attention to the natural treeless localities. – Arch. Hydrobiol./Algological Studies 101: 109–120. [PDF]

NEUSTUPA, J. & NĢMCOVÁ, Y. (2001): Morphological and taxonomic study of three terrestrial eustigmatophycean species. - Nova Hedwigia Beih. 123: 373–386. [PDF]

NEUSTUPA, J.; NĢMCOVÁ, Y. & KALINA, T. (2001): Silica-scaled Chrysophytes of Southern Bohemia and Českomoravská vrchovina (Czech-Moravian Highlands, Czech Republic). - Algological Studies 102: 23–34.

NEUSTUPA, J.; NĢMCOVÁ, Y. & KALINA, T.(2001): Mallomonas pumilio var. pumilio – a new species in algal flora of Czech Republic. – Novit. Bot. Univ. Carol. 13: 9–11. [PDF]

KALINA, T.; NĢMCOVÁ, Y. & NEUSTUPA, J. (2000): Silica-scaled chrysophytes of the Czech Republic 1. District Česká Lípa (Northern Bohemia) and part of the Central Bohemia. – Arch. Hydrobiol./Algological Studies 96: 29-47.

NĢMCOVÁ, Y.; KALINA, T.; NEUSTUPA, J. & NOVÁKOVÁ, S. (2000): Scale-bearing chrysophyte Mallomonas calceolus Bradley a new record from Czech Republic.- Novit. Bot. Univ. Carol. 13: 7-11. [PDF]

NEUSTUPA, J. (1998): Prasiola crispa (Lightfoot) Meneghini in King`s preserve in Prague. - Novit. Bot. Univ. Carol. 12: 35-39. [PDF]

Alumni

Postgraduates (Ph.D.): Pavel Škaloud (2008), Kateųina Černá (2010), Ondųej Peksa (2011), Jana Kulichová (2011), Jan Š¯astný (2013), Kateųina Procházková (2020), Kateųina Woodard (2023)

Pre-graduates (Mgr. / MSc.): Lenka Šejnohová (2003), Pavel Škaloud (2004), Lucie Ošlejšková (2004), Magda Ųezáčová (2005), Jana Veselá (2007), Ladislav Hodač (2007), Katarína Nemjová (2009), Renata Svátková (2009), Anna Štifterová (2012), Tereza Poláčková (2013), Radka Nováková (2013), Petra Mutinová (2015), Kateųina Jirková (2017), Edith Buchtová (2017), Andrea Hanousková (2020), Veronika Kantnerová (2022), Adéla Čečmanová (2022), Daniel H. Mezník (2022), Alena Pilíková (2023), Dominika Dbalá (2024)

(together with Pavel Škaloud, Yvonne Nģmcová, Jana Kulichová, Martina Pichrtová and others)

State: married (daughters Ta¯ána - * 2004, Ane˛ka - * 2007, Ludmila - * 2010)

Editor of Nova Hedwigia for non-diatom microalgal groups (i.e. green algae, chrysophytes, dinoflagellates, euglenoids).