Jiří Neustupa


Associate professor at Department of Botany, Faculty of Science, Charles University Prague



Research fields


Phenotypic plasticity and geometric morphometrics of algae


Taxonomy and phylogeny of green algae


Community structure of phototrophic subaerial biofilms


Phytobenthos ecology in peatlands



Google Scholar Citation Report


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Personal data


Editorial duties and manuscript reviews






Phenotypic plasticity and geometric morphometrics of algae


NEUSTUPA, J. & ŠASTNÝ, J. (2018): Symmetry breaking of the cellular lobes closely relates to phylogenetic structure within green microalgae of the Micrasterias lineage (Zygnematophyceae). - PeerJ 6: e6098. [PDF]

NEUSTUPA, J. & NĚMCOVÁ, Y. (2018): Morphological allometry constrains symmetric shape variation, but not asymmetry, of Halimeda tuna (Bryopsidales, Ulvophyceae) segments. - Plos One 13: e0206492. [PDF]

NEUSTUPA, J. (2017): Asymmetry and integration of cellular morphology in Micrasterias compereana. - BMC Evolutionary Biology 17: 1. [PDF - journal website]

NEUSTUPA, J. (2016): Static allometry of unicellular green algae: scaling of cellular surface area and volume in the genus Micrasterias (Desmidiales) - Journal of Evolutionary Biology 29: 292-305. [PDF - journal website] [PDF - final accepted version]

WOODARD, K. & NEUSTUPA, J. (2016): Morphometric asymmetry of frustule outlines in the pennate diatom Luticola poulickovae (Bacillariophyceae). - Symmetry 8: 150, doi:10.3390/sym8120150. [PDF]

WOODARD, K.; KULICHOVÁ, J.; POLÁČKOVÁ, T. & NEUSTUPA, J. (2016): Morphometric allometry of representatives of three naviculoid genera throughout their life cycle. - Diatom Research 31: 231-242. [PDF - journal website] [PDF - final accepted version]

NEUSTUPA, J. (2013): Patterns of symmetric and asymmetric morphological variation in unicellular green microalgae of the genus Micrasterias (Desmidiales, Viridiplantae). - Fottea 13: 53-63. [PDF]

NEUSTUPA, J.; ŠASTNÝ, J.; NEMJOVÁ, K.; MAZALOVÁ, P.; GOODYER, E.; POULÍČKOVÁ, A. & ŠKALOUD, P. (2011): A novel, combined approach to assessing species delimitation and biogeography within the well-known desmid species Micrasterias fimbriata and M. rotata (Desmidiales, Steptophyta). - Hydrobiologia 667: 223–239. [PDF + supplementary material]

NEUSTUPA, J.; ŘEZÁČOVÁ-ŠKALOUDOVÁ, M. & NĚMCOVÁ, Y. (2010): Shape variation of the silica-scales of Mallomonas kalinae (Mallomonadales, Synurophyceae) in relation to their position on the cell body. - Nova Hedwigia Beih. 136: 33-42. [PDF - upon request]

ČERNÁ, K. & NEUSTUPA, J. (2010): The pH-related morphological variations of two acidophilic species of Desmidiales (Viridiplantae) isolated from a lowland peat bog, Czech Republic. - Aquatic Ecology 44: 409-419. [PDF]

NĚMCOVÁ, Y.; NEUSTUPA, J.; KVÍDEROVÁ, J & ŘEZÁČOVÁ-ŠKALOUDOVÁ, M. (2010): Morphological plasticity of silica scales of Synura echinulata (Synurophyceae) in crossed gradients of light and temperature - a geometric morphometric approach. - Nova Hedwigia Beih. 136: 21-32. [PDF - upon request]

SAVRIAMA, Y.; NEUSTUPA, J. & KLINGENBERG, C. (2010): Geometric morphometrics of symmetry and allometry in Micrasterias rotata (Zygnemophyceae, Viridiplantae). - Nova Hedwigia Beih. 136: 43-54 [PDF - see at Klingenberg lab page]

FRÁNKOVÁ, M.; POULÍČKOVÁ, A.; NEUSTUPA, J.; PICHRTOVÁ, M. & MARVAN, P. (2009): Geometric morphometrics – a sensitive method for diatom morphospecies distinguishing: a case study on the sympatric populations of Reimeria sinuata and Gomphonema tergestinum (Bacillariophyceae) from the River Bečva, Czech Republic. - Nova Hedwigia 88: 81-95.

VESELÁ, J.; NEUSTUPA, J.; PICHRTOVÁ, M. & POULÍČKOVÁ, A. (2009): Morphometric study of Navicula morphospecies (Baccilariophyta) with respect to diatom life cycle. - Fottea 9: 307-316. [PDF]

NEUSTUPA, J.; ŠASTNÝ, J. & HODAČ, J. (2008): Temperature-related phenotypic plasticity in the green microalga Micrasterias rotata. - Aquatic Microbial Ecology 51: 77-86. [PDF]

NEUSTUPA, J. & NEMJOVÁ, K. (2008): Quantitative assessment of morphological variation of six Pseudococcomyxa strains by geometric morphometric descriptors. - Fottea 8: 111-116. [PDF]

NEUSTUPA, J. & ŠKALOUD, P. (2007): Geometric morphometrics and qualitative patterns in the morphological variation of five species of Micrasterias (Zygnemophyceae, Viridiplantae). - Preslia 79: 401-417. [PDF]

NEUSTUPA, J. & NĚMCOVÁ, Y. (2007): A geometric morphometric study of the variation in scales of Mallomonas striata (Synurophyceae, Heterokontophyta). - Phycologia 46: 123-130. [PDF]

NEUSTUPA, J. & ŠASTNÝ, J. (2006): The geometric morphometric study of Central European species of the genus Micrasterias (Zygnematophyceae, Viridiplantae). - Preslia 78: 253-263. [PDF]

NEUSTUPA, J. (2005): Phenotypic plasticity of microalgal cultures in culture collections: a geometric morphometric appproach. - Oceanol. Hydrobiol. Stud. 34(3): 97-107. [PDF]

NEUSTUPA, J. & HODAČ, L. (2005): Changes in shape of the coenobial cells of an experimental strain of Pediastrum duplex var.duplex (Chlorophyta) reared at different pHs. - Preslia 77: 439-452. [PDF]




Taxonomy and phylogeny of green algae


PROCHÁZKOVÁ, K.; NĚMCOVÁ, Y. & NEUSTUPA, J. (2018): Phyllosiphon duini sp. nov. (Trebouxiophyceae, Chlorophyta), a species isolated from a corticolous phototrophic biofilm. - Cryptogamie Algologie 39: 23-34. [PDF]

PROCHÁZKOVÁ, K.; NĚMCOVÁ, Y. & NEUSTUPA, J. (2016): Phyllosiphon ari sp. nov. (Watanabea clade, Trebouxiophyceae), a new parasitic species isolated from leaves of Arum italicum (Araceae). - Phytotaxa 283: 143-154. [PDF]

NEUSTUPA, J. (2015): Chlorophyta (excl. Ulvophyceae). In: FREY, W. (ed.), Syllabus of Plant Families, Part 2/1, Photoautotrophic eukaryotic Algae, pp. 191-246, Schweizerbart Verl.

NEUSTUPA, J. (2015): Streptophyta p.p. (excl. Charophyceae). In: FREY, W. (ed.), Syllabus of Plant Families, Part 2/1, Photoautotrophic eukaryotic Algae, pp. 282-293, Schweizerbart Verl.

NEUSTUPA, J. (2015): Trentepohliales. In: FREY, W. (ed.), Syllabus of Plant Families, Part 2/1, Photoautotrophic eukaryotic Algae, pp. 261-264, Schweizerbart Verl.

PROCHÁZKOVÁ, K.; NĚMCOVÁ, Y. & NEUSTUPA, J. (2015): A new species Jenufa aeroterrestrica (Chlorophyceae incertae sedis, Viridiplantae), described from Europe. - Preslia 87: 403-416. [PDF]

PROCHÁZKOVÁ, K.; NĚMCOVÁ, Y.; KULICHOVÁ, J. & NEUSTUPA, J. (2015): Morphology and phylogeny of parasitic and free-living members of the genus Phyllosiphon (Trebouxiophyceae, Chlorophyta). - Nova Hedwigia 101: 501-518. [PDF - upon request]

NEUSTUPA, J.; ŠASTNÝ, J. & ŠKALOUD, P. (2014): Splitting of Micrasterias fimbriata (Desmidiales, Viridiplantae) into two monophyletic species and description of Micrasterias compereana sp. nov. - Plant Ecology and Evolution 147: 405-411. [PDF]

POULÍČKOVÁ, A.; MAZALOVÁ, P.; VAŠUT, R.J.; ŠARHANOVÁ, P.; NEUSTUPA, J. & ŠKALOUD, P. (2014): DNA content variation and its significance in the evolution of the genus Micrasterias (Desmidiales, Streptophyta). - PLOS One 9: e86247. [PDF]

NEUSTUPA, J.; NĚMCOVÁ, Y.; VESELÁ, J.; STEINOVÁ, J. & ŠKALOUD, P. (2013): Parachloroidium gen. nov. (Trebouxiophyceae, Chlorophyta), a novel genus of coccoid green algae from subaerial corticolous biofilms. - Phycologia 52: 411-421. [PDF]

NEUSTUPA, J.; NĚMCOVÁ, Y.; VESELÁ, J.; STEINOVÁ, J. & ŠKALOUD, P. (2013): Leptochlorella corticola gen. et sp. nov. and Kalinella apyrenoidosa sp. nov.: two new Chlorella-like green microalgae (Trebouxiophyceae, Chlorophyta) from subaerial habitats. - International Journal of Systematic and Eukaryotic Microbiology 63: 377-387. [PDF]

ELIÁŠ, M.; NEUSTUPA, J.; PAŽOUTOVÁ, M. & ŠKALOUD, P. (2013): A case of taxonomic inflation in coccoid algae: Ellipsoidion parvum and Neocystis vischeri are conspecific with Neocystis (=Nephrodiella) brevis (Chlorophyta, Trebouxiophyceae). - Phytotaxa 76: 15-27 [PDF]

ŠASTNÝ, J.; ŠKALOUD, P.; LANGENBACH, D.; NEMJOVÁ, K. & NEUSTUPA, J. (2013): Polyphasic evaluation of Xanthidium antilopaeum and X. cristatum (Zygnematophyceae, Streptophyta) species complex. - Journal of Phycology 49: 401-416. [PDF]

ŠKALOUD, P.; ŠASTNÝ, J.; NEMJOVÁ, K.; MAZALOVÁ, P.; POULÍČKOVÁ, A. & NEUSTUPA, J. (2012): Molecular phylogeny of baculiform desmid taxa (Zygnematophyceae). - Plant Systematics and Evolution 298: 1281-1292. [PDF]

ŠKALOUD, P.; NEMJOVÁ, K.; VESELÁ, J.; ČERNÁ, K. & NEUSTUPA, J. (2011): A multilocus phylogeny of the desmid genus Micrasterias (Streptophyta): evidence for the accelerated rate of morphological evolution in protists. - Molecular Phylogenetics and Evolution 61: 933-943. [PDF]

NĚMCOVÁ, Y.; ELIÁŠ, M.; ŠKALOUD, P.; HODAČ, L. & NEUSTUPA, J. (2011): Jenufa gen. nov.: a new genus of coccoid green algae (Chlorophyceae, incertae sedis) previously recorded by environmental sequencing. - Journal of Phycology 47: 928-938. [PDF]

NEMJOVÁ, K.; NEUSTUPA, J.; ŠASTNÝ, J.; ŠKALOUD, P. & VESELÁ, J. (2011): Species concept and morphological differentiation of strains traditionally assigned to Micrasterias truncata. - Phycological Research 59: 208-220. [PDF]

Neustupa, J.; Eliáš, M.; Škaloud, P.; Němcová, Y. & Šejnohová, L. (2011): Xylochloris irregularis gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccoid green alga. - Phycologia 50: 57-66. [PDF]

NEUSTUPA, J.; ŠKALOUD, P. & ŠASTNÝ, J. (2010): The molecular phylogenetic and geometric morphometric evaluation of Micrasterias crux-melitensis / M. radians species complex. – Journal of Phycology 46: 703-714. [PDF]

ELIÁŠ, M.; NĚMCOVÁ, Y.; ŠKALOUD, P. ; NEUSTUPA, J.; KAUFNEROVÁ, V. & ŠEJNOHOVÁ, L. (2010): Hylodesmus singaporensis gen. et sp. nov., a new autosporic subaerial green alga (Scenedesmaceae, Chlorophyta) from Singapore. - International Journal of Systematic and Eukaryotic Microbiology 60: 1224-1235. [PDF]

NEUSTUPA, J.; NĚMCOVÁ, Y; ELIÁŠ, M. & ŠKALOUD, P. (2009): Kalinella bambusicola gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid Chlorella-like subaerial alga from Southeast Asia. - Phycological Research 57: 159-169. [PDF]

ELIÁŠ, M. & NEUSTUPA, J. (2009): Pseudomarvania gen. nov. (Chlorophyta, Trebouxiophyceae), a new genus for “budding” subaerial green algae Marvania aerophytica Neustupa & Šejnohová and Stichococcus ampulliformis Handa. - Fottea 9: 169-177. [PDF]

ELIÁŠ, M.; NEUSTUPA, J. & ŠKALOUD, P. (2008): Elliptochloris bilobata var. corticola var. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccal green alga. - Biologia 63: 787-794. [PDF]

ŠASTNÝ, J. & NEUSTUPA, J. (2008): Cosmarium gauthierae sp. nov. (Conjugatophyceae, Desmidiales) from an ephemeral pool in South-West Macedonia. - Cryptogamie Algologie 29: 255-260. [PDF]

NEUSTUPA, J.; ELIÁŠ, M. & ŠEJNOHOVÁ, L. (2007):  A taxonomic study of two Stichococcus species (Trebouxiophyceae, Chlorophyta) with a starch-enveloped pyrenoid. - Nova Hedwigia 84: 51-63. [PDF - upon request]

NEUSTUPA, J. (2005): Investigations on the genus Phycopeltis (Trentepohliaceae, Chlorophyta) from South-East Asia, including the description of two new species. - Cryptogamie Algologie 26: 229-242. [PDF]

NEUSTUPA, J. (2004): Two new aerophytic species of the genus Podohedra DÜRINGER (Chlorophyceae) – Arch. Hydrobiol./Algological Studies 112: 1-16. [PDF]

NEUSTUPA, J. (2003): The genus Phycopeltis (Trentepohliales, Chlorophyta) in tropical Southeast Asia. – Nova Hedwigia 76: 487-505. [PDF]

NEUSTUPA, J. & ŠEJNOHOVÁ, L. (2003): Marvania aerophytica sp. nov. – a new aerial tropical green alga. – Biologia 58: 503-507. [PDF]




Community structure of phototrophic subaerial biofilms


ŠTIFTEROVÁ, A. & NEUSTUPA, J. (2017): Small-scale variation of corticolous microalgal covers: Effects of microhabitat, season, and space. - Phycological Research 65: 299-311. [PDF - journal website] [PDF - final accepted version]

ŠTIFTEROVÁ, A. & NEUSTUPA, J. (2015): Community structure of corticolous microalgae within a single forest stand: evaluating the effects of bark surface pH and tree species. - Fottea 15: 113-122. [PDF]

NOVÁKOVÁ, R. & NEUSTUPA, J. (2015): Microalgal biofilms on common yew needles in relation to anthropogenic air pollution in urban Prague, Czech Republic. - Science of the Total Environment 508: 7-12. [PDF]

KULICHOVÁ, J.; ŠKALOUD, P. & NEUSTUPA, J. (2014): Molecular diversity of green corticolous microalgae from two submediterranean European localities. - European Journal of Phycology 49: 345-355. [PDF]

NEUSTUPA, J. & ŠTIFTEROVÁ, A. (2013): Distribution patterns of subaerial corticolous microalgae in two European regions. - Plant Ecology and Evolution 146: 279-289. [PDF]

NEUSTUPA, J. & ŠKALOUD, P. (2010): Diversity of subaerial algae and cyanobacteria growing on bark and wood in the lowland tropical forests of Singapore. - Plant Ecology and Evolution 143: 51-62. [PDF]

NEUSTUPA, J. & ŠKALOUD, P. (2008): Diversity of subaerial algae and cyanobacteria on tree bark in tropical mountain habitats. - Biologia 63: 802-808. [PDF]

NEUSTUPA, J. & ŠKALOUD, P. (2004): Contribution to the knowledge of soil algae of two abandoned industrial sedimentation basins in Eastern Bohemia. – In: KOVÁŘ P. (ed.) - Natural recovery of man-made deposits in landscape (Biotic interactions and ore/ash-slag artificial ecosystems). - p. 188-192, Academia, Praha. [PDF]

NEUSTUPA, J. & ALBRECHTOVÁ, J. (2003): Aerial algae on spruce needles in the Krušné Hory Mts., Czech Republic. - Czech Phycol. 3: 161–168. [PDF]

NEUSTUPA, J. (2001): Soil algae from marlstone-substratum based biotopes in the Nature park Džbán (Central Bohemia, Czech Republic) with special attention to the natural treeless localities. – Arch. Hydrobiol./Algological Studies 101: 109–120. [PDF]




Phytobenthos ecology in peatlands


MUTINOVÁ, P.T.; NEUSTUPA, J.; BEVILACQUA, S. & TERLIZZI, A. (2016): Host specificity of epiphytic diatom (Bacillariophyceae) and desmid (Desmidiales) communities. - Aquatic Ecology 50: 697-709. [PDF]

NĚMCOVÁ, Y.; PUSZTAI, M.; ŠKALOUDOVÁ, M. & NEUSTUPA, J. (2016): Silica-scaled chrysophytes (Stramenopiles, Ochrophyta) along a salinity gradient: a case study from the Gulf of Bothnia western shore (northern Europe). - Hydrobiologia 764: 187-197. [PDF]

NEUSTUPA, J.; VESELÁ, J. & ŠASTNÝ, J. (2013): Differential cell size dynamics of desmids and diatoms in the phytobenthos of peatlands. - Hydrobiologia 709: 159-171. [PDF]

POULÍČKOVÁ, A.; BERGOVÁ, K.; HNILICA, R. & NEUSTUPA, J. (2013): Epibryic diatoms from ombrotrophic mires: diversity, gradients and indicating options. - Nova Hedwigia 96: 351-365. [PDF - upon request]

NEUSTUPA, J.; ČERNÁ, K. & ŠASTNÝ, J. (2012): Spatio-temporal community structure of peat bog benthic desmids on a microscale. - Aquatic Ecology 46: 229-239. [PDF + supplementary material]

NEUSTUPA, J.; ČERNÁ, K. & ŠASTNÝ, J. (2011): The effects of aperiodic desiccation on the diversity of benthic desmid assemblages in a lowland peat bog. - Biodiversity and Conservation 20: 1695-1711. [PDF + supplementary material]

NEUSTUPA, J.; ČERNÁ, K. & ŠASTNÝ, J. (2009): Diversity and morphological disparity of desmid assemblages in Central European peatlands. - Hydrobiologia 630: 243-256. [PDF] [supplementary material]

MACHOVÁ-ČERNÁ, K. & NEUSTUPA, J. (2009): Spatial patterns of algal assemblages in a peatbog ditch. - International Review of Hydrobiology 94: 40-56. [PDF]




Other topics


NEUSTUPA, J. (2018): Algologie a protistologie na Německé univerzitě v Praze v meziválečném období II. Ernst Georg Pringsheim a Institut pro rostlinnou fyziologii. - Dějiny věd a techniky 51/3: 169-196. [PDF]

NEUSTUPA, J. (2018): Algologie a protistologie na Německé univerzitě v Praze v meziválečném období I. Adolf Pascher a jeho odkaz. - Dějiny věd a techniky 50/4: 234-258. [PDF]

ELIÁŠ, M.; AMARAL, R.; FAWLEY, K.P.; FAWLEY, M.W.; NĚMCOVÁ, Y.; NEUSTUPA, J.; PŘIBYL, P.; SANTOS, L.M.A & ŠEVČÍKOVÁ, T. (2016): Eustigmatophyceae. In: ARCHIBALD, J.M.; SIMPSON, A.G.B.; SLAMOVITS, C. (eds.), Handbook of Protists, pp. 1-39, Springer. [PDF]

POULÍČKOVÁ, A.; NEUSTUPA, J.; HAŠLER, P.; TOMANEC, O. & COX, E.J. (2016): A new species, Navicula lothargeitleri sp. nov., within the Navicula cryptocephala complex (Bacillariophyceae). - Phytotaxa 273: 23-33. [PDF - journal website]

VARELLA-VALENTOVÁ, J.; KLEISNER, K.; HAVLÍČEK, J. & NEUSTUPA, J. (2014): Shape differences between the faces of homosexual and heterosexual men. - Arch. Sex. Behav. 43: 353-361 [PDF]

NĚMCOVÁ, Y.; KREIDLOVÁ, J.; PUSZTAI, M. & NEUSTUPA, J. (2013): Mallomonas pumilio group (Chrysophyceae/Stramenopiles) - a revision based on the scale/scale-case morphology and analysis of scale shape. - Nova Hedwigia Beih. 142: 27-49. [PDF - upon request]

VAN DE VIJVER, B.; MORAVCOVÁ, A.; KUSBER, W-H. & NEUSTUPA, J. (2013): Analysis of the type material of Pinnularia divergentissima (Bacillariophyceae). - Fottea 13: 1-14. [PDF]

NĚMCOVÁ, Y.; KREIDLOVÁ, J.; KOSOVÁ, A. & NEUSTUPA, J. (2012): Lakes and pools of Aquitaine region (France) - a biodiversity hotspot of Synurales in Europe. - Nova Hedwigia 95: 1-24. [PDF - upon request]

VESELÁ, J.; URBÁNKOVÁ, P.; ČERNÁ, K. & NEUSTUPA J. (2012): Ecological variation within traditional diatom morphospecies; diversity of Frustulia rhomboides sensu lato (Bacillariophyceae) in European freshwater habitats. - Phycologia 51: 552-561. [PDF]

POULÍČKOVÁ, A.; VESELÁ, J.; NEUSTUPA, J. & ŠKALOUD, P. (2010): Pseudocryptic diversity versus cosmopolitanism in diatoms: a case study on Navicula cryptocephala Kütz. (Bacillariophyceae) and morphologically similar taxa. - Protist 161: 353-369. [PDF]

POULÍČKOVÁ, A.; NEUSTUPA, J.; ŠPAČKOVÁ, J. & ŠKALOUD, P. (2009): Distribution of epipelic diatoms in artificial fishponds along environmental and spatial gradients. - Hydrobiologia 624: 81-90. [PDF]

Hašler, P.; Štěpánková, J.; Špačková, J.; Neustupa, J.; Kitner, M.; Hekera, P.; Veselá, J.; Burian, J. & Poulíčková, A. (2008): Epipelic cyanobacteria and algae: a case study from Czech ponds. - Fottea 8: 133-146. [PDF]

NEUSTUPA, J. & ŘEZÁČOVÁ, M. (2007): The genus Mallomonas (Mallomonadales, Synurophyceae) in several Southeast Asian urban water bodies - the biogeographic implications. - Nova Hedwigia 84: 249-259. [PDF]

ŘEZÁČOVÁ, M. & NEUSTUPA, J. (2007): Distribution of the genus Mallomonas (Synurophyceae) - ubiquitous dispersal in microorganisms evaluated. - Protist 158: 29-37. [PDF]

ŠKALOUD, P.; NEUSTUPA, J.; RADOCHOVÁ, B. & KUBÍNOVÁ, L. (2005): Confocal microscopy of chloroplast morphology and ontogeny in three strains of Dictyochloropsis (Trebouxiophyceae, Chlorophyta). - Phycologia 44: 261-269. [PDF]

NOVÁKOVÁ, S.; NĚMCOVÁ, Y.; NEUSTUPA, J.; ŘEZÁČOVÁ, M. & ŠEJNOHOVÁ, L. (2004): Silica-scaled chrysophytes in acid peat bogs of Bohemian Switzerland (Czech Republic) and Saxonian Switzerland (Germany). - Nova Hedwigia 78: 507-515. [PDF]

NOVÁKOVÁ, S.; ŘEZÁČOVÁ, M.; NĚMCOVÁ, Y.; NEUSTUPA, J. & KALINA, T. (2004): Mallomonas actinoloma var. maramuresensis (Synurophyceae) - a new species in algal flora of the Czech Republic. - Novit. Bot. Univ. Carol. 17: 7-10. [PDF]

ŘEZÁČOVÁ, M.; NEUSTUPA, J. & ŠEJNOHOVÁ, L. (2004): Five species of Mallomonas (Synurophyceae) new to the algal flora of the Czech Republic. - Preslia 76: 175-181. [PDF]

STIBRAL, K.; KOMÁREK, S. & NEUSTUPA, J. (2004): Přírodní estetika Josefa Velenovského. – Estetika 40: 117-126. [in Czech]

NĚMCOVÁ, Y.; NEUSTUPA, J.; NOVÁKOVÁ, S. & KALINA, T. (2003): Silica scaled chrysophytes of the Czech Republic. – Acta Univ. Carol. 47: 285-346.

ŠEJNOHOVÁ, L.; ŠKALOUD, P.; NEUSTUPA, J.; NOVÁKOVÁ, S.; ŘEZÁČOVÁ, M. & OŠLEJŠKOVÁ, L. (2003): Algae and cyanoprokaryotic species from peat bog, streams, ponds and aerial biotopes in the region of South Šumava Mts. – Czech Phycol. 3: 41–52. [PDF]

NĚMCOVÁ, Y.; NEUSTUPA, J.; KALINA, T. & NOVÁKOVÁ, S. (2002): Silica-scaled chrysophytes of the Šumava National Park and the Třeboňsko UNESCO Biosphere Reserve (Southern Bohemia, Czech Republic). – Nordic Journal of Botany 22: 375–393. [PDF]

NEUSTUPA J. (2002): An easy method for light microscopic distinguishing of xanthophycean and eustigmatophycean strains. – Czech Phycol. 2: 43–46. [PDF]

NEUSTUPA, J.; NOVÁKOVÁ, S.; ŠEJNOHOVÁ, L.; ŠKALOUD, P. & ŘEZÁČOVÁ, M. (2002): Algae from aquatic, peat bog and aerial biotopes in the catchment area of the River Křemelná in Šumava National Park. – Czech Phycol. 2: 47–61. [PDF]

NĚMCOVÁ, Y.; KALINA, T. & NEUSTUPA, J. (2001): Chrysomonády a slunivky s křemitými šupinami alpinských a subalpinských rašeliniš Krkonoš.- Opera Corcontica 37: 334–341. [in Czech]

NĚMCOVÁ, Y.; KALINA, T.; NEUSTUPA, J. & NOVÁKOVÁ, S. (2001): Silica-scaled chrysophytes of the Krkonoše Mountains (Czech Republic). - Algological Studies 101: 97–108.

NEUSTUPA, J. & NĚMCOVÁ, Y. (2001): Morphological and taxonomic study of three terrestrial eustigmatophycean species. - Nova Hedwigia Beih. 123: 373–386. [PDF]

NEUSTUPA, J.; NĚMCOVÁ, Y. & KALINA, T. (2001): Silica-scaled Chrysophytes of Southern Bohemia and Českomoravská vrchovina (Czech-Moravian Highlands, Czech Republic). - Algological Studies 102: 23–34.

NEUSTUPA, J.; NĚMCOVÁ, Y. & KALINA, T.(2001): Mallomonas pumilio var. pumilio – a new species in algal flora of Czech Republic. – Novit. Bot. Univ. Carol. 13: 9–11. [PDF]

KALINA, T.; NĚMCOVÁ, Y. & NEUSTUPA, J. (2000): Silica-scaled chrysophytes of the Czech Republic 1. District Česká Lípa (Northern Bohemia) and part of the Central Bohemia. – Arch. Hydrobiol./Algological Studies 96: 29-47.

NĚMCOVÁ, Y.; KALINA, T.; NEUSTUPA, J. & NOVÁKOVÁ, S. (2000): Scale-bearing chrysophyte Mallomonas calceolus Bradley a new record from Czech Republic.- Novit. Bot. Univ. Carol. 13: 7-11. [PDF]

NEUSTUPA, J. (1998): Prasiola crispa (Lightfoot) Meneghini in King`s preserve in Prague. - Novit. Bot. Univ. Carol. 12: 35-39. [PDF]




Postgraduates (Ph.D.)

Pre-graduates (Mgr. / MSc.)

Anna Štifterová

Andrea Hanousková

Kateřina Woodard

 Veronika Rubešová

Kateřina Procházková


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Postgraduates (Ph.D.)

Graduation year

Pre-graduates (Mgr. / MSc.)

Graduation year

Jan Šastný


Edith Buchtová 2017

Jana Kulichová


Kateřina Jirková 2017

Ondřej Peksa


Petra Mutinová 2015

Kateřina Černá


Radka Nováková


Pavel Škaloud


Tereza Poláčková


Anna Štifterová


Renata Svátková


Katarína Nemjová




Jan Hodač




Jana Veselá (Kulichová)




Magda Řezáčová (Škaloudová)




Lucie Ošlejšková




Pavel Škaloud




Lenka Šejnohová





Botany of Non-vascular Plants / Botanika bezcévných rostlin

(together with David Svoboda)


[presentations from lectures in 2018/2019: Cyanobacteria (sinice), [Glaucophyta+]Rhodoplantae, SAR1, SAR2, Viridiplantae1, Viridiplantae2, Lišejníky1, Lišejníky2, Mechorosty1, Mechorosty2]

[presentations from practises in 2018/2019: Cyanobacteria+Glaucophyta, Rhodophyta, SAR1, SAR2, Viridiplantae1, Viridiplantae2, Viridiplantae3]




Ecology of Cyanobacteria and Algae / Ekologie sinic a řas

(together with Linda Nedbalová)

[presentations from lectures in 2018/2019: microalgal distribution, microphytobenthos, freshwater biomonitoring, distribution and ecology of seaweeds_1distribution and ecology of seaweeds_2, marine biomonitoring]




Marine Phycology Course / Kurz mořské algologie

(together with Yvonne Němcová)


KMA 2019 - informační letáček / flyer

prezentace ze semináře

rozdělení projektů

makrořasy - R

makrořasy - B, G



gallery of past MPCs




Phycology I

(together with Pavel Škaloud, Yvonne Němcová and Jana Kulichová)

[lectures on Phaeophyceae]




Phycology II

(together with Pavel Škaloud, Yvonne Němcová and Jana Kulichová)

[lectures on Glaucophyta+red algae, Cladophorales+Trentepohliales]





Geometric morphometrics



Personal data


* 8-th April 1976, Rakovník, former Czechoslovakia

Nationality: Czech


State: married (daughters Taána - * 2004, Anežka - * 2007, Ludmila - * 2010)




Editorial duties and manuscript reviews


Editor of Nova Hedwigia for non-diatom microalgal groups (i.e. green algae, chrysophytes, dinoflagellates, euglenoids).


Member of the editorial boards of Plant Ecology and Evolution, Preslia, and Fottea


Reviews of manuscripts for Hydrobiologia, American Journal of Botany, Planta, Phycological Research, Preslia, Fottea, Nova Hedwigia, Diatom Research, Biologia, European Journal of Phycology, Journal of Phycology, Cryptogamie Algologie, BMC Evolutionary Biology, Algal Research, Algological Studies, Folia Geobotanica, Geobiology, Biological Journal of the Linnean Society, New Zealand Journal of Botany, Nordic Journal of Botany, Geomicrobiology, Plos One, Phytotaxa, Journal of Plant Research, Geobiology, Protist, Phycologia, Brazilian Journal of Botany.



Kurz mořské algologie / Marine Phycology Course (galerie / gallery)



(Marine Biology Station, Piran, Slovenia)

galerie 1, galerie 2, galerie 3



(Marine Biology Station, Piran, Slovenia)

galerie 1, galerie 2, galerie 3



(Biologische Station Hiddensee, Germany)

galerie 1, galerie 2, galerie 3



(Marine Biology Station, Piran, Slovenia)

galerie 1, galerie 2, galerie 3



(Poulsker, Bornholm, Denmark)

galerie 1, galerie 2



(Marine Biology Station, Piran, Slovenia)

galerie 1, galerie 2



(Poulsker, Bornholm, Denmark)