Vančurová, L., Malíček, J., Steinová, J. & Škaloud, P. (2021): Choosing the right life partner: Ecological drivers of lichen symbiosis.
Frontiers in Microbiology 12: #769304. [WEB]
2020
Amaral, R., Fawley, K.P., Němcová, Y., Ševčíková, T., Lukešová, A., Fawley, M.W., Santos, L.M.A. & Eliáš, M. (2020): Towards modern classification of eustigmatophytes, including the description of Neomonodaceae, fam. nov. and three new genera. Journal of Phycology 56: 630-648. [WEB]
Arc, E., Pichrtová, M., Kranner, I. & Holzinger, A. (2020): Pre-akinete formation in Zygnema sp. from polar habitats is associated with metabolite re-arrangement. Journal of Experimental Botany 71: 3314–3322. [PDF]
Černajová, I. & Škaloud, P. (2020): Lessons from culturing lichen soredia. Symbiosis 82: 109–122. [PDF]
Čertnerová, D. & Škaloud, P. (2020): Substantial intraspecific genome size variation in golden-brown algae and its phenotypic consequences. Annals of Botany 126: 1077–1087. [PDF]
Del Cortona, A., Jackson, C.J., Bucchini, F., Van Bel, M., D’hondt, S., Škaloud, P., Delwiche, C.W., Knoll, A.H., Raven, J.A., Verbruggen, H., Vandepoele, K., De Clerck, O. & Leliaert, F. (2020): Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds. Proceedings of the National Academy of Sciences 117: 2551-2559. [PDF]
Kulichová, J. & Urbánková, P. (2020): Symmetric and asymmetric components of shape variation in the diatom genus Frustulia (Bacillariophyta). Symmetry 12: #1626. [PDF]
Neustupa, J. (2020): Gynodioecy in the common spindle tree (Euonymus europaeus L.) involves differences in the asymmetry of corolla shapes between sexually differentiated flowers. PeerJ 8: #e8571. [PDF]
Neustupa, J. & Němcová, Y. (2020): Morphometric analysis of surface utricles in Halimeda tuna (Bryopsidales, Ulvophyceae) reveals variation in their size and symmetry within individual segments. Symmetry 12: #1278. [PDF]
Neustupa, J. & Woodard, K. (2020): Geometric morphometrics reveals increased symmetric shape variation and asymmetry related to lead exposure in the freshwater green alga Micrasterias compereana. Ecological Indicators 111: #106054. [WEB]
Pichrtová, M., Hejduková, E., Nedbalová, L. & Elster, J. (2020): How to survive winter? Adaptation and acclimation strategies of eukaryotic algae from polar terrestrial ecosystems. In: di Prisco, G., Edwards, H. G. M., Elster, J. & Huiskes, A. H. L. (eds): Life in extreme environments: Insights in biological capability (Ecological reviews), Cambridge University Press, pp. 101-125. [PDF]
Schnablová, R., Neustupa, J., Woodard, K., Klimešová, J. & Herben, T. (2020): Disentangling phylogenetic and functional components of shape variation among shoot apical meristems of a wide range of herbaceous angiosperms. American Journal of Botany 107: 20-30. [PDF]
Škaloud, P., Škaloudová, M., Jadrná, I., Bestová, H., Pusztai, M., Kapustin, D. & Siver, P.A. (2020): Comparing morphological and molecular estimates of species diversity in the freshwater genus Synura (Stramenopiles): a model for understanding diversity of eukaryotic microorganisms. Journal of Phycology 56: 574-591. [PDF]
Vančurová, L., Kalníková, V., Peksa, O., Škvorová, Z., Malíček, J., Moya, P., Chytrý, K., Černajová, I. & Škaloud, P. (2020): Symbiosis between river and dry lands: Phycobiont dynamics on river gravel bars. Algal Research 51: #102062. [PDF]
2019
Černajová, I. & Škaloud, P. (2019): The first survey of Cystobasidiomycete yeasts in the lichen genus Cladonia; with the description of Lichenozyma pisutiana gen. nov., sp. nov. Fungal Biology 123: 625-637. [WEB]
Čertnerová, D., Čertner, M. & Škaloud, M. (2019): Molecular phylogeny and evolution of phenotype in silica‐scaled chrysophyte genus Mallomonas. Journal of Phycology 55: 912-923. [WEB]
Fawley, M.W., Němcová, Y. & Fawley, K.P. (2019): Phylogeny and characterization of Paraeustigmatos columelliferus, gen. et sp. nov., a member of the Eustigmatophyceae that may represent a basal group within the Eustigmatales. Fottea 19: 107–114. [PDF]
Fonseca, B.M., Feijó, L.M. & Neustupa, J. (2019): Habitat preferences of Micrasterias arcuata (Desmidiales, Viridiplantae) in wetlands from central Brazil: an allometric study. Hydrobiologia 842: 143-156. [WEB]
Holišová, V., Urban, M., Kolenčík, M., Němcová, Y., Schröfel, A., Peikertová, P., Slabotinský, J. & Kratošová, G. (2019): Biosilica-nanogold composite: Easy-to-prepare catalyst for soman degradation. Arabian Journal of Chemistry 12: 262-271. [PDF]
Kim, J.I., Shin, H., Škaloud, P., Jung, J., Yoon, H.S. & Archibald, J.M. (2019): Comparative plastid genomics of Synurophyceae: inverted repeat dynamics and gene content variation. BMC Evolutionary Biology 19: #20. [PDF]
Klimešová, K., Rindi, F. & Škaloud, P. (2019): There is more than meets the eye: DNA cloning demonstrates high genetic heterogeneity in populations of the subaerial green alga Trentepohlia (Trentepohliales, Chlorophyta). Journal of Phycology 55: 224-235. [PDF]
Kulichová, J., Neustupa, J., Vrbová, K., Levkov, Z. & Kopalová, K. (2019): Asymmetry in the genus Luticola. Diatom Research 34: 67-74. [WEB]
Nemcova, Y. & Kapustin, D. (2019): Mallomonas teres, sp. nov. (Chrysophyceae), simultaneously revealed in two distant European peat-bog regions. Cryptogamie Algologie 40: 35-39. [PDF]
Pinseel, E., Kulichová, J., Scharfen, V., Urbánková, P., Van de Vijver, B. & Vyverman, W. (2019): Extensive cryptic diversity in the terrestrial diatom Pinnularia borealis (Bacillariophyceae). Protist 170: 121-140. [WEB]
Pusztai, M. & Škaloud, P. (2019): Elucidating the evolution and diversity of Uroglena-like colonial flagellates (Chrysophyceae), polyphyletic origin of the morphotype. European Journal of Phycology 54: 401-416. [PDF]
Rippin, M., Pichrtová, M., Arc, E., Kranner, I., Becker, B. & Holzinger, A. (2019): Metatranscriptomic and metabolite profiling reveals vertical heterogeneity within a Zygnema green algal mat from Svalbard (High Arctic). Environmental Microbiology 21: 4283-4299. [PDF]
Siver, P.A., Skogstad, A. & Nemcova, Y. (2019): Endemism, palaeoendemism and migration: the case for the ‘European endemic’,
Mallomonas intermedia. European Journal of Phycology 54: 222-234. [PDF]
Škaloud, P., Škaloudová, M., Doskočilová, P., Kim, J.I., Shin, W. & Dvořák, P. (2019):
Speciation in protists: Spatial and ecological divergence processes cause rapid species diversification in a freshwater chrysophyte.
Molecular Ecology 28: 1084-1095. [PDF]
Stancheva, R., Škaloud, P., Pusztai, M., Loflen, C.L. & Sheath, R.G. (2019): First record of the rare freshwater alga Tetrasporopsis fuscescens (Chrysomerophyceae, Ochrophyta) in North America. Fottea 19: 163-174. [PDF]
Steinová, J., Škaloud, P., Yahr, R., Bestová, H. & Muggia, L. (2019): Reproductive and dispersal strategies shape the diversity of mycobiont-photobiont association in Cladonia lichens. Molecular Phylogenetics and Evolution 134: 226-237. [PDF]
Trumhová, K., Holzinger, A., Obwegeser, S., Neuner, G. & Pichrtová, M. (2019) The conjugating green alga Zygnema sp. (Zygnematophyceae) from the Arctic shows high frost Tolerance in mature cells (Pre-Akinetes). Protoplasma 256: 1681-1694. [WEB]
Vilchis, M.I., Neustupa, J., Dreckmann, K., Quintanar, A. & Sentíes, A. (2019): Discrimination of the species of the Crassiphycus corneus/C. usneoides complex (Gracilariaceae, Rhodophyta) through geometric morphometric analysis. Nova Hedwigia 109: 291-301. [WEB]
2018
Bestová, H., Munoz, F., Svoboda, P, Škaloud P. & Violle C. (2018): Ecological and biogeographical drivers of freshwater green algae biodiversity: from local communities to large-scale species pools of desmids. Oecologia 186: 1017–1030. [PDF]
Gusev, E.S., Čertnerová, D., Škaloudová, M. & Škaloud, P. (2018): Exploring cryptic diversity and distribution patterns in the
Mallomonas kalinae/rasilis species complex with a description of a new taxon — Mallomonas furtiva sp. nov.: Journal of Eukaryotic Microbiology: 65: 38-47. [WEB]
Hansen, G., Šťastný, J., Moestrup, Ø. & Lundholm, N. (2018): Diversity and conservation of desmids in Bornholm, Denmark – revisiting after 130 years. Nordic Journal of Botany 36: #e01994. [WEB]
Holzinger, A., Albert, A., Aigner, S., Uhl, J., Schmitt-Kopplin, P., Trumhová K. & Pichrtová, M. (2018): Arctic, Antarctic, and temperate green algae Zygnema spp. under UV-B stress: vegetative cells perform better than pre-akinetes. Protoplasma 255: 1239-1252. [PDF]
Kaštovský, J., Hauer, T., Geriš, R., Chattová, B., Juráň, J., Lepšová-Skácelová, O., Pitelková, P., Puzstai, M., Škaloud, P., Šťastný, J., Čapková, K., Bohunická, M. & Mühlsteinová, R. (2018) Atlas sinic a řas České republiky I. Vydavatel: Powerprint, Praha. 1-383. ISBN 978-80-7568-125-6. [PDF]
Kaštovský, J., Hauer, T., Geriš, R., Chattová, B., Juráň, J., Lepšová-Skácelová, O., Pitelková, P., Puzstai, M., Škaloud, P., Šťastný, J., Čapková, K., Bohunická, M. & Mühlsteinová, R. (2018): Atlas sinic a řas České republiky II. Vydavatel: Powerprint, Praha. 1-479. ISBN 978-80-7568-125-6. [PDF]
Moya, P., Chiva, S., Molins, A., Jadrná, I., Škaloud, P., Peksa, O. & Barreno, E. (2018): Myrmecia israeliensis as the primary symbiotic microalga in squamulose lichens growing in European and Canarian terricolous communities.
Fottea 18: 72-85. [PDF]
Němcová, Y. & Rott, E. (2018): Diversity of silica-scaled chrysophytes in high-altitude Alpine sites (North Tyrol, Austria) including a description of Mallomonas pechlaneri sp. nov. Cryptogamie, Algologie 39: 63-83. [PDF]
Neustupa, J. (2018): Algologie a protistologie na Německé univerzitě v Praze v meziválečném období I. Adolf Pascher a jeho odkaz. Dějiny věd a techniky 50: 234-258. [PDF]
Neustupa, J. (2018): Algologie a protistologie na Německé univerzitě v Praze v meziválečném období II. Ernst Georg Pringsheim a Institut pro rostlinnou fyziologii. Dějiny věd a techniky 51: 169-196. [PDF]
Neustupa, J. & Němcová, Y. (2018): Morphological allometry constrains symmetric shape variation, but not asymmetry, of Halimeda tuna (Bryopsidales, Ulvophyceae) segments. Plos ONE 13: #e0206492. [PDF]
Neustupa, J. & Šťastný, J. (2018): Symmetry breaking of the cellular lobes closely relates to phylogenetic structure within green microalgae of the Micrasterias lineage (Zygnematophyceae). PeerJ 6: #e6098. [PDF]
Pichrtová, M., Holzinger, A., Kulichová, J., Ryšánek, D., Šoljaková, T., Trumhová, K. & Němcová, Y. (2018): Molecular and morphological diversity of Zygnema and Zygnemopsis (Zygnematophyceae, Streptophyta) on Svalbard (High Arctic). European Journal of Phycology 53: 492-508. [PDF]
Procházková, K., Němcová, Y. & Neustupa, J. (2018): Phyllosiphon duini sp. nov. (Trebouxiophyceae, Chlorophyta), a species isolated from a corticolous phototrophic biofilm. Cryptogamie, Algologie 39: 23-34. [PDF]
Svoboda, P., Lindström, E.S., Osman, O.A. & Langenheder, S. (2018): Dispersal timing determines the importance of
priority effects in bacterial communities. The ISME Journal 12: 644–646. [PDF]
Škaloud, P., Moya, P., Molins, A., Peksa, O., Santos-Guerra, A. & Barreno, E. (2018): Untangling the hidden intrathalline microalgal diversity in Parmotrema pseudotinctorum: Trebouxia crespoana sp. nov.
The Lichenologist 50: 357-369. [PDF]
Škaloud, P., Rindi, F., Boedeker, C. & Leliaert, F. (2018): Freshwater Flora of Central Europe, Vol 13: Chlorophyta: Ulvophyceae, Springer Spektrum. - 289 pp. [WEB]
Vančurová, L., Muggia, L., Peksa, O., Řídká, T. & Škaloud, P. (2018): The complexity of symbiotic interactions influences the ecological amplitude of the host: a case study in Stereocaulon (lichenized Ascomycota). Molecular Ecology 27: 3016-3033. [PDF]
2017
Donner, A., Ryšánek, D., Mikhailyuk, T. & Karsten, U. (2017): Ecophysiological traits of various genotypes of a green key alga in biological soil crusts from the semi-arid Colorado Plateau, USA. Journal of Applied Phycology 29: 2911-2923. [PDF]
Kristiansen, J. & Škaloud, P. (2017): Chrysophyta. In: Archibald, J.M., Simpson, A.G.B., Slamovits C.H. (eds.), Handbook of the Protists, Second Edition. - pp. 331-366, Springer International Publishing. [PDF]
Mutinová, P.T., Kulichová, J. & Ugland, K.I. (2017): Temporal and spatial dynamics of diatom (Bacillariophyceae) communities in a peatland area. Cryptogamie, Algologie 38: 253-266. [PDF]
Neustupa, J. (2017): Asymmetry and integration of cellular morphology in Micrasterias compereana. BMC Evolutionary Biology 17: 1. [PDF]
Pierangelini, M., Ryšánek, D., Lang, I., Adlassnig, W. & Holzinger, A. (2017): Terrestrial adaptation of green algae Klebsormidium and Zygnema (Charophyta) involves diversity in photosynthetic traits but not in CO2 acquisition. Planta 246: 971-986. [WEB]
Rindi, F., Ryšánek, D. & Škaloud, P. (2017): Problems of epitypification in morphologically simple green microalgae: a case study of two widespread species of Klebsormidium (Klebsormidiophyceae, Streptophyta). Fottea 17: 78-88. [PDF]
Škaloud, P. & Leliaert, F. (2017): Validation of the genus Hazenia H.C.Bold 1958 (Ulvophyceae). Notulae Algarum 41: 1-4.
Štifterová, A. & Neustupa, J. (2017): Small-scale variation of corticolous microalgal covers: Effects of microhabitat, season, and space. Phycological Research 65: 299-311. [WEB]
Tájek, P., Vrbová, K. & Kulichová, J. (2017): Nové nálezy vzácné endemické rozsivky Pinnularia ferrophila. Arnika 2017/2: 30-34. [WEB]
2016
Eliáš, M., Amaral, R., Fawley, K.P., Fawley, M.W., Němcová, Y.; Neustupa, J.; Přibyl, P.; Santos, L.M.A & Ševčíková, T. (2016): Eustigmatophyceae. In: Archibald, J.M., Simpson, A.G.B., Slamovits, C. (eds.), Handbook of Protists, pp. 1-39, Springer. [WEB]
Holzinger, A. & Pichrtová, M. (2016): Abiotic stress tolerance in charophyte green algae: New challenges for omics techniques. Frontiers in Plant Science 7 (678): 1-17. [PDF]
Jo, B.Y., Kim, J.I., Škaloud, P., Siver, P.A. & Shin, W. (2016): Multigene phylogeny of Synura (Synurophyceae) and descriptions of four new species based on morphological and DNA evidence. European Journal of Phycology 51: 413-430. [PDF]
Kulichová, J. & Fialová, M. (2016): Correspondence between morphology and ecology: morphological variation of the Frustulia crassinervia-saxonica species complex (Bacillariophyta) reflects the ombro-minerotrophic gradient. Cryptogamie, Algologie 37: 15-28. [WEB]
Malavasi, V., Škaloud, P., Rindi, F., Tempesta, S., Paoletti, M. & Pasqualetti, M. (2016): DNA-based taxonomy in ecologically versatile microalgae: A re-evaluation of the species concept within the coccoid green algal genus Coccomyxa (Trebouxiophyceae, Chlorophyta) PLoS ONE 11: #e0151137. [PDF]
Mutinová, P.T., Neustupa, J., Bevilacqua, S. & Terlizzi, A. (2016): Host specificity of epiphytic diatom (Bacillariophyceae) and desmid (Desmidiales) communities. Aquatic Ecology 50: 697-709. [PDF]
Němcová, Y., Pusztai, M., Škaloudová, M. & Neustupa, J. (2016): Silica-scaled chrysophytes (Stramenopiles, Ochrophyta) along a salinity gradient: a case study from the Gulf of Bothnia western shore (northern Europe). Hydrobiologia 764: 187–197. [PDF]
Neustupa, J. (2016): Static allometry of unicellular green algae: scaling of cellular surface area and volume in the genus Micrasterias (Desmidiales). Journal of Evolutionary Biology 29: 292–305. [WEB]
Pichrtová, M., Arc, E., Stöggl, W., Kranner, I., Hájek, T., Hackl, H. & Holzinger, A. (2016): Formation of lipid bodies and changes in fatty acid composition upon pre-akinete formation in Arctic and Antarctic Zygnema (Zygnematophyceae, Streptophyta) strains. FEMS Microbiology Ecology 92: #fiw096. [PDF]
Pichrtová, M., Hájek, T. & Elster, J. (2016): Annual development of mat-forming conjugating green algae Zygnema spp. in hydroterrestrial habitats in the Arctic. Polar Biology 39: 1653-1662. [PDF]
Poulíčková, A., Neustupa, J., Hašler, P., Tomanec, O. & Cox, E.J. (2016): A new species, Navicula lothargeitleri sp. nov., within the Navicula cryptocephala complex (Bacillariophyceae). Phytotaxa 273: 23-33. [WEB]
Procházková, K., Němcová, Y. & Neustupa, J. (2016): Phyllosiphon ari sp. nov. (Watanabea clade, Trebouxiophyceae), a new parasitic species isolated from leaves of Arum italicum (Araceae). Phytotaxa 283: 143–154. [PDF]
Pusztai, M., Čertnerová, D., Škaloudová, M. & Škaloud, P. (2016): Elucidating the phylogeny and taxonomic position of the genus Chrysodidymus Prowse (Chrysophyceae, Synurales). Cryptogamie, Algologie 37: 297-307. [PDF]
Remias, D., Pichrtová, M., Pangratz, M., Lütz, C. & Holzinger, A. (2016): Ecophysiology, secondary pigments and ultrastructure of Chlainomonas sp. (Chlorophyta) from the European Alps compared with Chlamydomonas nivalis forming red snow. FEMS Microbiology Ecology 92: #fiw030.
[PDF]
Ryšánek, D., Elster, J., Kováčik, L. & Škaloud, P. (2016): Diversity and dispersal capacities of a terrestrial algal genus Klebsormidium (Streptophyta) in polar regions. FEMS Microbiology Ecology 92: #fiw039. [PDF]
Ryšánek, D., Holzinger, A. & Škaloud, P. (2016): Influence of substrate and pH on the diversity of aeroterrestrial alga Klebsormidium (Klebsormidiales, Streptohyta): a potentially important factor for sympatric speciation. Phycologia 55: 347-358. [PDF]
Škaloud, P., Friedl, T., Hallmann, C., Beck, A. & Dal Grande, F. (2016): Taxonomic revision and species delimitation of coccoid green algae currently assigned to the genus Dictyochloropsis (Trebouxiophyceae, Chlorophyta). Journal of Phycology 52: 599-617. [PDF]
Urbánková, P., Scharfen, V. & Kulichová, J. (2016): Molecular and automated identification of the diatom genus Frustulia in northern Europe. Diatom Research 31: 217-229. [PDF]
Woodard, K., Kulichová, J., Poláčková, T. & Neustupa, J. (2016): Morphometric allometry of representatives of three naviculoid genera throughout their life cycle. Diatom Research 31: 231-242. [PDF]
Woodard, K. & Neustupa, J. (2016): Morphometric asymmetry of frustule outlines in the pennate diatom Luticola poulickovae (Bacillariophyceae). Symmetry 8: #150. [PDF]
2015
Moya, P., Škaloud, P., Chiva, S., García-Breijo, F.J., Reig-Armiñana, J. Vančurová, L. & Barreno, E. (2015): Molecular phylogeny and ultrastructure of the lichen microalga Asterochloris mediterranea sp. nov. from Mediterranean and Canary Islands ecosystems. International Journal of Systematic and Evolutionary Microbiology 65: 1838-1854. [PDF]
Němcová, Y., Pichrtová, M. & Zeisek, V. (2015): Mallomonas alpestrina sp. nov. (Synurales, Chrysophyceae, Stramenopiles) and its
spineless relatives—Mallomonas alata group. Phytotaxa 222: 111–120. [PDF]
Nováková, R. & Neustupa, J. (2015): Microalgal biofilms on common yew needles in relation to anthropogenic air pollution in urban Prague, Czech Republic. Science of the Total Environment 508: 7-12. [PDF]
Procházková, K., Němcová, Y., Kulichová, J. & Neustupa, J. (2015): Morphology and phylogeny of parasitic and free-living members of the genus Phyllosiphon (Trebouxiophyceae, Chlorophyta). Nova Hedwigia 101: 501-518. [WEB]
Procházková, K., Němcová, Y. & Neustupa, J. (2015): A new species Jenufa aeroterrestrica (Chlorophyceae incertae sedis,
Viridiplantae), described from Europe. Preslia 87: 403–416. [PDF]
Ryšánek, D., Hrčková, K. & Škaloud, P. (2015): Global ubiquity and local endemism of free-living terrestrial protists: phylogeographic assessment of the streptophyte alga Klebsormidium. Environmental Microbiology 17: 689-698. [PDF]
Škaloud, P., Steinová, J., Řídká, T., Vančurová, L. & Peksa, O. (2015): Assembling the challenging puzzle of algal biodiversity: species delimitation within the genus Asterochloris (Trebouxiophyceae, Chlorophyta). Journal of Phycology 51: 507-527. [PDF]
Štifterová, A. & Neustupa, J. (2015): Community structure of corticolous microalgae within a single forest stand: evaluating the effects of bark surface pH and tree species. Fottea 15: 113-122. [PDF]
Urbánková, P., Kulichová, J. & Kilroy, C. (2015): Frustulia curvata and Frustulia paulii, two diatom species new to science. Diatom Research 30: 65-73. [WEB]
Vančurová, L., Peksa, O., Němcová, Y., & Škaloud, P. (2015): Vulcanochloris (Trebouxiales, Trebouxiophyceae), a new genus of lichen photobiont from La Palma, Canary Islands, Spain. Phytotaxa 219: 118-132. [PDF]
Wierzchos, J., DiRuggiero, J., Vítek., P., Artieda, O., Souza-Egipsy, V., Škaloud, P., Tisza, M., Davila, A.F., Vílchez, C., Garbayo, I. & Ascaso, C. (2015): Adaptation strategies of endolithic chlorophototrophs to survive the hyperarid and extreme solar radiation environment of the Atacama Desert. Frontiers in Microbiology 6: #934. [PDF]
Yahr, R., Florence, A., Škaloud, P. & Voytsekhovich, A. (2015): Molecular and morphological diversity in photobionts associated with Micarea s. str. (Lecanorales, Ascomycota). The Lichenologist 47: 403-414. [PDF]
2014
Drahota, P., Škaloud, P., Nováková, B. & Mihaljevič, M. (2014): Comparison of Pb, Zn, Cd, As, Cr, Mo and Sb adsorption onto natural surface coatings in a stream draining natural as geochemical anomaly. Bulletin of Environmental Contamination and Toxicology 93: 311-315. [PDF]
Fučíková, K., Leliaert, F., Cooper, E.D., Škaloud, P., D'Hondt, S., De Clerck, O., Gurgel, C.F.D, Lewis, L.A., Lewis, P.O., Lopez-Bautista, J.M., Delwiche, C.F. & Verbruggen, H. (2014): New phylogenetic hypotheses for the core Chlorophyta based on chloroplast sequence data. Frontiers in Ecology and Evolution 2: #63. [PDF]
Jurdíková, K., Kulichová, J., Bestová, H., Leliaert, F. & Škaloud, P. (2014): Exploration of nuclear DNA markers for population structure assessment in the desmid Micrasterias rotata (Zygnematophyceae, Streptophyta). Journal of Eukaryotic Microbiology 61: 509-519. [WEB]
Kulichová, J., Škaloud, P. & Neustupa, J. (2014): Molecular diversity of green corticolous microalgae from two submediterranean European localities. European Journal of Phycology 49: 345-355. [PDF]
Němcová, Y. (2014):
Silica-scaled chrysophytes (Chrysophyceae, Stramenopiles) of the Istrian Peninsula (Slovenia, Croatia) – species flourishing in humid subtropical climate). Nordic Journal of Botany 32: 875-880. [PDF]
Neustupa, J., Šťastný, J. & Škaloud, P. (2014): Splitting of Micrasterias fimbriata (Desmidiales, Viridiplantae) into two monophyletic species and description of Micrasterias compereana sp. nov. Plant Ecology and Evolution 147: 405-411. [PDF]
Pichrtová, M., Hájek, T. & Elster, J. (2014): Osmotic stress and recovery in field populations of Zygnema sp. (Zygnematophyceae, Streptophyta) on Svalbard (High Arctic) subjected to natural desiccation. FEMS Microbiology Ecology 89: 270-280. [PDF]
Pichrtová, M., Kulichová, J. & Holzinger, A. (2014): Nitrogen limitation and slow drying induce desiccation tolerance in conjugating green algae (Zygnematophyceae, Streptophyta) from polar habitats. Plos ONE 9: #e113137. [PDF]
Poulíčková, A., Mazalová, P., Vašut, R.J., Šarhanová, P., Neustupa, J. & Škaloud, P. (2014): DNA content variation and its significance in the evolution of the genus Micrasterias (Desmidiales, Streptophyta). Plos ONE 9: #e86247. [PDF]
Řídká, T., Peksa, O., Rai, H., Upreti, D.K. & Škaloud, P. (2014): Photobiont diversity in Indian Cladonia lichens, with special emphasis on the geographical patterns. In: Rai, H. & Upreti, D.K. (eds.), Terricolous lichens in India. - pp. 53-71, Springer, New York. [PDF]
Škaloud, P., Lukešová, A., Malavasi, V., Ryšánek, D., Hrčková, K. &
Rindi, F. (2014): Molecular evidence for the polyphyletic origin of low pH adaptation in the genus Klebsormidium (Klebsormidiophyceae, Streptophyta). Plant Ecology and Evolution 147: 333-345. [PDF]
Škaloud, P., Němcová, Y., Pytela, J., Bogdanov, N.I., Bock, C. & Pickinpaugh, S.H. (2014): Planktochlorella nurekis, gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid green alga carrying significant biotechnological potential. Fottea 14: 53-62. [PDF]
Škaloud, P., Škaloudová, M., Procházková, A. & Němcová, Y. (2014): Morphological delineation and distribution patterns of four newly described species within the Synura petersenii species complex (Chrysophyceae, Stramenopiles). European Journal of Phycology 49: 213-229. [PDF]
Svoboda, P., Kulichová, J. & Šťastný, J. (2014): Spatial and temporal community structure of desmids on a small spatial scale. Hydrobiologia 722: 291-303. [PDF]
Valentova, J.V., Kleisner, K., Havlíček, J. & Neustupa, J. (2014): Shape differences between the faces of homosexual and heterosexual men. Archives of Sexual Behavior 43: 353-361. [PDF]
2013
Eliáš, M., Neustupa, J., Pažoutová, M. & Škaloud, P. (2013): A case of taxonomic inflation in coccoid algae: Ellipsoidion parvum and Neocystis vischeri are conspecific with Neocystis (=Nephrodiella) brevis (Chlorophyta, Trebouxiophyceae). Phytotaxa 76: 15-27. [WEB]
Gaysina, L., Němcová, Y., Škaloud, P., Ševčíková, T. & Eliáš, M. (2013): Chloropyrula uraliensis gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a new green coccoid alga with a unique ultrastructure, isolated from soil in South Urals. Journal of Systematics and Evolution 51: 476-484. [PDF]
Kaufnerová, V. & Eliáš, M. (2013): The demise of the genus Scotiellopsis Vinatzer (Chlorophyta). Nova Hedwigia 97: 415-428.
[PDF]
Muggia, L., Vančurová, L., Škaloud, P., Peksa, O., Wedin, M. & Grube, M. (2013): The symbiotic playground of lichen thalli – a highly flexible photobiont association in rock-inhabiting lichens. FEMS Microbiology Ecology 85:313–323.
[PDF]
Neustupa, J. (2013):
Patterns of symmetric and asymmetric morphological variation in unicellular green microalgae of the genus Micrasterias (Desmidiales, Viridiplantae). Fottea 13: 53-63.
[PDF]
Neustupa, J., Němcová, Y., Veselá, J., Steinová, J. & Škaloud, P. (2013): Leptochlorella corticola gen. et sp. nov. and Kalinella apyrenoidosa sp. nov.: two novel Chlorella-like green microalgae (Trebouxiophyceae, Chlorophyta) from subaerial habitats. International Journal of Systematic and Evolutionary Microbiology 63: 377-387.
[PDF]
Neustupa, J., Němcová, Y., Veselá, J., Steinová, J. & Škaloud, P. (2013): Parachloroidium gen. nov. (Trebouxiophyceae, Chlorophyta), a novel genus of coccoid green algae from subaerial corticolous biofilms. Phycologia 52: 411-421. [PDF]
Neustupa, J. & Štifterová, A. (2013): Distribution patterns of subaerial corticolous microalgae in two European regions. Plant Ecology and Evolution 146: 279–289. [PDF]
Neustupa, J., Veselá, J. & Šťastný, J. (2013): Differential cell size structure of desmids and diatoms in the phytobenthos of peatlands.
Hydrobiologia 709: 159-171. [PDF]
Němcová, Y. & Kreidlová, J. (2013):
Two new species of Mallomonas (Chrysophyceae: Synurales): Mallomonas temonis and Mallomonas divida.
Phytotaxa 87: 11-18. [PDF]
Němcová, Y., Kreidlová, J., Pusztai, M. & Neustupa, J. (2013): Mallomonas pumilio group (Chrysophyceae/Stramenopiles) – a revision based on the scale/scale-case morphology and analysis of scale shape. Nova Hedwigia, Beiheft 142: 27-49.
[WEB]
Pichrtová, M., Němcová, Y., Škaloud, P. & Rott, E. (2013): Silica-scaled chrysophytes from North Tyrol (Austria) including a description of Mallomonas tirolensis sp. nov. Nova Hedwigia, Beiheft 142: 69-85. [WEB]
Pichrtová, M., Remias, D., Lewis, L. A. & Holzinger, A. (2013): Changes in phenolic compounds and cellular ultrastructure of Arctic and Antarctic strains of Zygnema (Zygnematophyceae, Streptophyta) after exposure to experimentally enhanced UV to PAR ratio. Microbial Ecology 65: 68-83.
[PDF]
Poulíčková, A., Bergová, K., Hnilica, R. & Neustupa, J. (2013): Epibryic diatoms from ombrotrophic mires: diversity, gradients and indicating options. Nova Hedwigia 96: 351-365. [PDF]
Steinová, J., Stenroos, S., Grube, M. & Škaloud, P. (2013): Genetic diversity and species delimitation of the zeorin-containing red-fruited Cladonia species (lichenized Ascomycota) assessed with ITS rDNA and β-tubulin data. The Lichenologist 45: 665-684.
[PDF]
Škaloud, P. & Rindi, F. (2013): Ecological differentiation of cryptic species within an asexual protist morphospecies: a case study of filamentous green alga Klebsormidium (Streptophyta). Journal of Eukaryotic Microbiology 60: 350-362.
[PDF]
Škaloud, P., Kalina, T., Nemjová, K., De Clerck, O. & Leliaert, F. (2013): Morphology and phylogenetic position of the freshwater green microalgae Chlorochytrium (Chlorophyceae) and Scotinosphaera (Scotinosphaerales, ord. nov., Ulvophyceae). Journal of Phycology 49: 115-129. [PDF]
Škaloud, P., Kristiansen, J. & Škaloudová, M. (2013): Developments in the taxonomy of silica-scaled chrysophytes – from morphological and ultrastructural to molecular approaches (review). Nordic Journal of Botany 31: 385-402. [PDF]
Škaloud, P., Nedbalová, L., Elster, J. & Komárek, J. (2013): A curious occurrence of Hazenia broadyi spec. nova in Antarctica, and the review of the genus Hazenia (Ulotrichales, Chlorophyceae). Polar Biology 36: 1281-1291. [WEB]
Škaloud, P., Škaloudová, M., Pichrtová, M., Němcová, Y., Kreidlová, J. & Pusztai, M. (2013): www.chrysophytes.eu – a database on distribution and ecology of silica-scaled chrysophytes in Europe. Nova Hedwigia, Beiheft 142: 141-146. [PDF]
Škaloudová, M. & Škaloud, P. (2013): A new species of Chrysosphaerella (Chrysophyceae: Chromulinales), Chrysosphaerella rotundata, sp. nov., from Finland. Phytotaxa 130: 34-42. [PDF]
Šťastný, J., Škaloud, P., Langenbach, D., Nemjová, K. & Neustupa, J. (2013): Polyphasic evaluation of Xanthidium antilopaeum and Xanthidium cristatum (Zygnematophyceae, Streptophyta) species complex. Journal of Phycology 49: 401-416. [PDF]
Urbánková, P. & Veselá, J. (2013): DNA-barcoding: A case study in the diatom genus Frustulia (Bacillariophyceae). Nova Hedwigia, Beiheft 142: 147-162. [WEB]
Van de Vijver, B., Moravcová, A., Kusber, W.H. & Neustupa, J. (2013): Analysis of the type material of Pinnularia divergentissima (Grunow in Van Heurck) Cleve (Bacillariophyceae). Fottea 13: 1-14. [PDF]
2012
Přibyl, P., Eliáš, M., Cepák, V., Lukavský, J. & Kaštánek, P. (2012): Zoosporogenesis, morphology, ultrastructure, pigment composition, and phylogenetic position of Trachydiscus minutus (Eustigmatophyceae, Heterokontophyta). Journal of Phycology 48: 231-242. [PDF]
Neustupa, J., Černá, K. & Šťastný, J. (2012):
Spatio-temporal community structure of peat bog benthic desmids on a microscale.
Aquatic Ecology 46: 229-239.
[PDF]
Němcová, Y. & Pichrtová, M. (2012):
Shape dynamics of silica scales (Chrysophyceae, Stramenopiles) associated with pH.
Fottea 12: 281-291.
[PDF]
Němcová, Y., Kreidlová, J., Kosová, A. & Neustupa, J. (2012): Lakes and pools of Aquitaine region (France) - a biodiversity hotspot of Synurales in Europe.
Nova Hedwigia 95: 1-24.
[PDF]
Škaloud, P., Kynčlová, A., Benada, O., Kofroňová, O. & Škaloudová, M. (2012):
Toward a revision of the genus Synura, section Petersenianae (Synurophyceae, Heterokontophyta): morphological characterization of six pseudo-cryptic species.
Phycologia 51: 303-329.
[PDF]
Škaloud, P., Šťastný, J., Nemjová, K., Mazalová, P., Poulíčková, A. & Neustupa, J. (2012): Molecular phylogeny of baculiform desmid taxa (Zygnematophyceae).
Plant Systematics and Evolution 298: 1281-1292.
[PDF]
Šťastný, J. & Kouwets, F.A.C. (2012): New and remarkable desmids (Zygnematophyceae, Streptophyta) from Europe: taxonomical notes based on LM and SEM observations. Fottea 12: 293-313.
[PDF]
Veselá, J., Urbánková, P., Černá, K. & Neustupa, J. (2012):
Ecological variation within traditional diatom morphospecies: diversity of Frustulia rhomboides sensu lato (Bacillariophyceae) in European freshwater habitats.
Phycologia 51: 552-561.
[PDF]
2011
Banks, J.A., Nishiyama, T., Hasebe M. + 100 additional authors incl. Elias, M. (2011):
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 332: 960-963.
[WEB]
Němcová, Y., Bulant, P. & Kristiansen, J. (2011):
Mallomonas solea-ferrea and Mallomonas siveri (Chrysophyceae/Synurophyceae): two new taxa from the
Western Cape (South Africa).
Nova Hedwigia 93: 375-384.
[PDF]
Němcová, Y., Eliáš, M., Škaloud, P., Hodač, L. & Neustupa, J. (2011):
Jenufa, gen. nov.: a new genus of coccoid green algae (Chlorophyceae, incertae sedis) previously recorded by environmental sequencing.
Journal of Phycology 47: 928-938.
[PDF]
Nemjová, K., Neustupa, J., Šťastný, J., Škaloud, P. & Veselá, J. (2011):
Species concept and morphological differentiation of strains traditionally assigned to Micrasterias
truncata.
Phycological Research 59: 208-220.
[PDF]
Neustupa, J., Černá, K. & Šťastný, J. (2011):
The effects of aperiodic desiccation on the diversity of benthic desmid assemblages in a lowland peat bog.
Biodiversity and Conservation 20: 1695-1711.
[PDF]
Neustupa, J., Eliáš, M., Škaloud, P., Němcová, Y. & Šejnohová, L. (2011):
Xylochloris irregularis, gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccoid green alga. Phycologia 50: 57-66.
[PDF]
Neustupa, J., Šťastný, J., Nemjová, K., Mazalová, P., Goodyer, E., Poulíčková, A. & Škaloud, P. (2011):
A novel, combined approach to assessing species delimitation and biogeography within the well-known desmid species Micrasterias fimbriata and M. rotata (Desmidiales, Steptophyta).
Hydrobiologia 667: 223-239.
[PDF]
Peksa, O. & Škaloud, P. (2011):
Do photobionts influence the ecology of lichens? A case study of environmental preferences in symbiotic green alga Asterochloris (Trebouxiophyceae).
Molecular Ecology 20: 3936-3948.
[PDF]
Pichrtová, M. & Němcová, Y. (2011):
Effect of temperature on size and shape of silica scales in Synura petersenii and Mallomonas tonsurata (Stramenopiles).
Hydrobiologia 673: 1-11.
[PDF]
Pichrtová, M., Janatková, K. & Němcová, Y. (2011):
Silica-scaled chrysophytes from Abisko (Swedish Lapland).
Nordic Journal of Botany 29: 112-118.
[PDF]
Škaloud, P., Nemjová, K., Veselá, J., Černá, K. & Neustupa, J. (2011):
A multilocus phylogeny of the desmid genus Micrasterias (Streptophyta): Evidence for the accelerated rate of morphological evolution in protists.
Molecular Phylogenetics and Evolution 61: 933-943.
[PDF]
Sucgang, C. et al. incl. Eliáš, M. (2011):
Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum.
Genome Biology 12: #R20.
[PDF]
Svoboda, D., Peksa, O. & Veselá, J. (2011):
Analysis of the species composition of epiphytic lichens in Central European oak forests.
Preslia 83: 129-144.
[WEB]
Veselá, J., Škaloud, P., Urbánková, P., Škaloudová, M. & Kalina, T. (2011:)
The CAUP image database.
Fottea 11: 313-316.
[PDF]
Vlahou, G., Eliáš, M., von Kleist-Retzov, J.C., Wiesner, R.J. & Rivero, F. (2011):
The Ras related GTPase Miro is not required for mitochondrial transport in Dictyostelium discoideum.
European Journal of Cell Biology 90: 342-355.
[PDF]
2010
Bačkor, M., Peksa, O., Škaloud, P. & Bačkorová, M. (2010):
Photobiont diversity in lichens from metal-rich substrata based on ITS rDNA sequences.
Ecotoxicology and Environmental Safety 73: 603-612.
[PDF]
Černá, K. (2010):
Small-scale spatial variation of benthic algal assemblages in a peat bog.
Limnologica 40: 315-321.
[PDF]
Černá, K. & Neustupa, J. (2010):
The pH-related morphological variations of two acidophilic species of Desmidiales (Viridiplantae) isolated from a lowland peat bog, Czech Republic.
Aquatic Ecology 44: 409-419.
[PDF]
Cock, J.M., Sterck, L., Rouzé, P., Scornet, D. + 70 additional authors incl. Elias, M. (2010):
The Ectocarpus genome and the independent evolution of multicellularity in brown algae.
Nature 465: 617-621.
[WEB]
Elias, M. (2010):
Patterns and processes in the evolution of the eukaryotic endomembrane system. Molecular Membrane Biology 27: 469-489.
[PDF]
Eliáš, M., Němcová, Y., Škaloud, P., Neustupa, J., Kaufnerová, V. & Šejnohová, L. (2010):
Hylodesmus singaporensis gen. et sp. nov., a new autosporic subaerial green alga (Scenedesmaceae, Chlorophyta) from Singapore.
International Journal of Systematic and Evolutionary Microbiology 60: 1224-1235.
[PDF]
Kynčlová, A., Škaloud, P. & Škaloudová, M. (2010):
Unveiling hidden diversity in the Synura petersenii species complex (Synurophyceae, Heterokontophyta).
Nova Hedwigia, Beiheft 136: 283-298.
[PDF]
Němcová, Y. (2010):
Diversity and ecology of silica-scaled chrysophytes (Synurophyceae, Chrysophyceae) in the National Nature Monument Swamp and Brehynsky Pond, Czech Republic.
Cryptogamie, Algologie 31: 229-243.
[PDF]
Němcová, Y., Neustupa, J., Kvíderová, J. & Řezáčová-Škaloudová, M. (2010):
Morphological plasticity of silica scales of Synura echinulata (Synurophyceae) in crossed gradients of light and temperature – a geometric morphometric approach. Nova Hedwigia, Beiheft 136: 21-32.
[WEB]
Neustupa, J. & Škaloud, P. (2010):
Diversity of subaerial algae and cyanobacteria growing on bark and wood in the lowland tropical forests of Singapore.
Plant Ecology and Evolution 143: 51-62.
[PDF]
Neustupa, J., Řezáčová-Škaloudová, M. & Němcová, Y. (2010):
Shape variation of the silica scales of Mallomonas kalinae (Mallomonadales, Synurophyceae) in relation to their position on the cell body.
Nova Hedwigia, Beiheft 136: 33-42.
[WEB]
Neustupa, J., Škaloud, P. & Šťastný, J. (2010):
The molecular phylogenetic and geometric morphometric evaluation of Micrasterias crux-melitensis / M. radians species complex.
Journal of Phycology 46: 703-714.
[PDF]
Pažoutová, M., Škaloud, P. & Nemjová, K. (2010):
Phylogenetic position of Ooplanctella planoconvexa gen. et comb. nova and Echinocoleum elegans (Oocystaceae, Trebouxiophyceae, Chlorophyta).
Fottea 10: 75-82.
[PDF]
Poulíčková, A., Veselá, J., Neustupa, J. & Škaloud, P. (2010):
Pseudocryptic diversity versus cosmopolitanism in diatoms: a case study on Navicula cryptocephala Kütz. (Bacillariophyceae) and morphologically similar taxa.
Protist 161: 353-369.
[PDF]
Řezáčová-Škaloudová, M., Neustupa, J. & Němcová, Y. (2010):
Effect of temperature on the variability of silicate structures in Mallomonas kalinae and Synura curtispina (Synurophyceae).
Nova Hedwigia, Beiheft 136: 55-70.
[WEB]
Savriama, Y., Neustupa, J. & Klingenberg, C.P. (2010):
Geometric morphometrics of symmetry and allometry in Micrasterias rotata (Zygnemophyceae, Viridiplantae). Nova Hedwigia, Beiheft 136: 43-54.
[WEB]
Skaloud, P. & Peksa, O. (2010):
Evolutionary inferences based on ITS rDNA and actin sequences reveal extensive diversity of the common lichen alga Asterochloris (Trebouxiophyceae, Chlorophyta). Molecular Phylogenetics and Evolution 54: 36-46.
[PDF]
Šťastný, J. (2010):
Desmids (Conjugatophyceae, Viridiplantae) from the Czech Republic; new and rare taxa, distribution, ecology.
Fottea 10: 1-74.
[PDF]
Svoboda, D., Peksa, O. & Veselá, J. (2010):
Epiphytic lichen diversity in Central European oak forests: Assessment of the effects of natural environmental factors and human influences.
Environmental Pollution 158: 812-819. [PDF]
2009
Elias, M. & Archibald, J.M. (2009):
Sizing up the genomic footprint of endosymbiosis.
BioEssays 31: 1273-1279. [PDF]
Elias, M. & Archibald, J.M. (2009):
The RJL family of small GTPases is an ancient eukaryotic invention probably functionally associated with the flagellar apparatus.
Gene 442: 63-72. [WEB]
Eliáš, M. & Neustupa, J. (2009):
Pseudomarvania, gen. nov. (Chlorophyta, Trebouxiophyceae), a new genus for “budding” subaerial green algae Marvania aerophytica Neustupa et Šejnohová and Stichococcus ampulliformis Handa.
Fottea 9: 169-177. [PDF]
Elias, M., Patron, N.J. & Keeling, P.J. (2009):
The RAB family GTPase Rab1A from Plasmodium falciparum defines a unique paralog shared by chromalveolates and Rhizaria.
Journal of Eukaryotic Microbiology 56: 348-356. [WEB]
Fránková, M., Poulíčková, A., Neustupa, J., Pichrtová, M. & Marvan, P. (2009):
Geometric morphometrics - a sensitive method to distinguish diatom morphospecies: a case study on the sympatric populations of Reimeria sinuata and Gomphonema tergestinum (Bacillariophyceae) from the River Bečva, Czech Republic.
Nova Hedwigia 88: 81-95. [WEB]
Janatková, K. & Němcová, Y. (2009):
Silica-scaled chrysophytes of Southern Bohemian water bodies, including Mallomonas conspersa Dürrschmidt with occurrence so far reported from Japan and New Zealand. Fottea 9: 93-99. [PDF]
Kovář, P., Rauch, O., Kubátová, A., Neustupa, J., Soldán, Z., Palice, Z., Dostál, P. & Štefánek, M. (2009): Ekologie obnovy narušených míst III. Cizorodé substráty v krajině. Živa 57: 116-119. [PDF]
Ma, L.J., Ibrahim, A.S., Skory, C., Grabherr, M.G., Burger, G., Butler, M., Elias, M. et al. (2009):
Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication.
PLoS Genetics 5: #e1000549. [PDF]
Machová-Černá, K., Neustupa, J. (2009):
Spatial distribution of algal assemblages in a temperate lowland peat bog.
International Review of Hydrobiology 94: 40-56. [PDF]
Němcová, Y. & Pichrtová, M. (2009):
The rare species Synura lapponica (Synurophyceae) new to the Czech Republic, local vs. global diversity in colonial synurophytes.
Biologia 64: 1070-1075. [PDF]
Nemjová, K. & Kaufnerová, V. (2009):
New reports of Vaucheria species (Vaucheriales, Xanthophyceae, Heterokontophyta) from the Czech Republic.
Fottea 9: 53-57. [PDF]
Neustupa, J., Černá, K. & Šťastný, J. (2009):
Diversity and morphological disparity of desmid assemblages in Central European peatlands.
Hydrobiologia 630: 243-256. [PDF]
Neustupa, J., Němcová, Y., Eliáš, M. & Škaloud, P. (2009):
Kalinella bambusicola gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid Chlorella-like subaerial alga from Southeast Asia.
Phycological Research 57: 159-169.
[PDF]
Pichrtová, M. & Veselá, J. (2009):
The silica-scaled chrysophytes of the Elbe Sandstone Region, Czech Republic.
Fottea 9: 101-106. [PDF]
Píšková, A., Grygar, T., Veselá, J. & Oberhänsli, H. (2009):
Diatom assemblage variations in the Aral Sea core C2/2004 over the past two millennia.
Fottea 9: 333-342. [PDF]
Poulíčková, A., Neustupa, J., Špačková, J. & Škaloud, P. (2009):
Distribution of epipelic diatoms in artificial fishponds along environmental and spatial gradients.
Hydrobiologia 624: 81-90. [PDF]
Prášil, O., Bína, D., Medová, H., Řeháková, K., Zapomělová, E., Veselá, J. & Oren, A. (2009):
Emission spectroscopy and kinetic fluorometry studies of the phototrophic microbial communities along the salinity gradient in the solar saltern evaporation ponds of Eilat, Israel.
Aquatic Microbial Ecology 56: 285-296. [PDF]
Řeháková, K., Zapomělová, E., Prášil, O., Veselá, J., Medová, H. & Oren, A. (2009):
Composition changes of phototrophic microbial communities along the salinity gradient in the solar saltern evaporation ponds of Eilat, Israel.
Hydrobiologia 636: 77-88. [WEB]
Škaloud, P. (2009):
Species composition and diversity of aero-terrestrial algae and cyanobacteria of the Boreč Hill ventaroles.
Fottea 9: 65-80. [PDF]
Šťastný, J. (2009):
The desmids of the Swamp Nature Reserve (North Bohemia, Czech Republic) and a small neighbouring bog: species composition and ecological condition of both sites.
Fottea 9: 135-148. [PDF]
Veselá, J. (2009):
Spatial heterogeneity and ecology of algal communities in an ephemeral sandstone stream in the Bohemian Switzerland National Park, Czech Republic. Nova Hedwigia 88: 531-547. [WEB]
Veselá, J. & Johansen, J. (2009):
The diatom flora of ephemeral headwater streams in the Elbsandsteingebirge region of the Czech Republic.
Diatom Research 24: 443-477. [PDF]
Veselá, J., Neustupa, J., Pichrtová, M. & Poulíčková A. (2009):
Morphometric study of Navicula morphospecies (Bacillariophyta) with respect to diatom life cycle.
Fottea 9: 307-316. [PDF]
2008
Eliáš, M. (2008):
The guanine nucleotide exchange factors Sec2 and PRONE: Candidate synapomorphies for the Opisthokonta and the Archaeplastida.
Molecular Biology and Evolution 25: 1526-1529.
[PDF]
Eliáš, M. & Novotný, M. (2008):
cpRAS: a novel circularly permuted RAS-like GTPase domain with a highly scattered phylogenetic distribution.
Biology Direct 3: #21.
[PDF]
Eliáš, M., Neustupa, J. & Škaloud, P. (2008):
Elliptochloris bilobata var. corticola var. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccal green alga.
Biologia 63: 787-794.
[PDF]
Hašler, P., Štěpánková, J., Špačková, J., Neustupa, J., Kitner, M., Hekera, P., Veselá, J., Burian, J. & Poulíčková, A. (2008):
Epipelic cyanobacteria and algae: a case study from Czech ponds.
Fottea 8: 133-146.
[PDF]
Machová, K., Elster, J. & Adamec, L. (2008):
Xanthophyceaen assemblages during winter–spring flood: autecology and ecophysiology of Tribonema fonticolum and T. monochloron. Hydrobiologia 600: 155-168.
[PDF]
Němcová, Y., Nováková, S. & Řezáčová-Škaloudová, M. (2008):
Synura obesa sp. nov. (Synurophyceae) and other silica-scaled chrysophytes from Abisko (Swedish Lapland).
Nova Hedwigia 86: 243-254.
[WEB]
Neustupa, J. & Nemjová, K. (2008):
Quantitative assessment of morphological variation of six Pseudococcomyxa strains by geometric morphometric descriptors.
Fottea 8: 111-116.
[PDF]
Neustupa, J. & Škaloud, P. (2008):
Diversity of subaerial algae and cyanobacteria on tree bark in tropical mountain habitats.
Biologia 63: 802-808.
[PDF]
Neustupa, J., Šťastný, J. & Hodač, L. (2008):
Temperature-related phenotypic plasticity in the green microalga Micrasterias rotata. Aquatic Microbial Ecology 51: 77-86.
[PDF]
Peksa, O. & Škaloud, P. (2008):
Changes in chloroplast structure in lichenized algae.
Symbiosis 46: 153-160.
[PDF]
Pichrtová, M. & Němcová, Y. (2008):
Geometric morphometric analyses of silica-scale variation in four Mallomonas species (Synurophyceae, Stramenopiles).
Nordic Journal of Botany 26: 77-82.
[PDF]
Škaloud, P. & Pažoutová, M., Veselá, J. & Neustupa, J. (2008):
Species composition of algae and cyanobacteria in biological soil crusts on natural substrata. Novitates Botanicae Universitatis Carolinae 19: 15-18.
[PDF]
Škaloud, P. & Peksa, O. (2008):
Comparative study of chloroplast morphology and ontogeny in Asterochloris (Trebouxiophyceae, Chlorophyta).
Biologia 63: 869-876.
[PDF]
Šťastný, J. (2008):
Desmids from ephemeral pools and aerophytic habitats from the Czech Republic.
Biologia 63: 884-890.
[PDF]
Šťastný, J. (2008):
Krásivky Přírodních rezervací "Chvojnov" a "Na Oklice".
Acta Rerum Naturalium 4: 13-16.
[PDF]
Šťastný, J. & Lenzenweger, R. (2008):
Ein Nachtrag zur Zieralgenflora (Desmidiales, Zygnematophyceae) der Schwemm bei Walchsee in Nordtirol (Österreich).
Phyton 48: 37-49.
[PDF]
Šťastný, J. & Neustupa, J. (2008):
Cosmarium gauthierae sp. nov. (Conjugatophyceae, Desmidiales) from an ephemeral pool in South-West Macedonia.
Cryptogamie Algologie 29: 255-260. [PDF]
2007
Merchant, S.S., Prochnik, S.E., Vallon, O., Harris, E.H., Karpowicz, S.J., Witman, G.B. + 117 additional authors incl. Eliáš, M. (2007):
The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318: 245-250.
[PDF]
Neustupa, J., Eliáš, M. & Šejnohová, L. (2007):
A taxonomic study of two Stichococcus species (Trebouxiophyceae, Chlorophyta) with a starch-enveloped pyrenoid.
Nova Hedwigia 84: 51-63.
[WEB]
Neustupa, J. & Němcová, Y. (2007):
A geometric morphometric study of the variation in scales of Mallomonas striata (Synurophyceae, Heterokontophyta). Phycologia 46: 123-130.
[PDF]
Neustupa, J. & Řezáčová, M. (2007):
The genus Mallomonas (Mallomonadales, Synurophyceae) in several Southeast Asian urban water bodies - the biogeographic implications.
Nova Hedwigia 84: 249-259.
[PDF]
Neustupa, J. & Škaloud, P. (2007):
Geometric morphometrics and qualitative patterns in the morphological variation of five species of Micrasterias (Zygnemophyceae, Viridiplantae). Preslia 79: 401-417.
[PDF]
Nováková, S. (2007):
Structure and dynamics of the algal flora in subalpine mires in the Krkonoše Mountains (Giant Mountains; Czech Republic).
Nova Hedwigia 84: 441-458.
[WEB]
Pichrtová, M., Řezáčová-Škaloudová, M. & Škaloud, P. (2007):
The silica-scaled chrysophytes of the Czech-Moravian Highlands.
Fottea 7: 43-48.
[PDF]
Řezáčová, M. & Neustupa, J. (2007):
Distribution of the genus Mallomonas (Synurophyceae) - Ubiquitous dispersal in microorganisms evaluated. Protist 158: 29-37.
[PDF]
Škaloud, P. (2007): Chloroplasty řas v konfokálním mikroskopu. Živa 55: 3-5. [PDF]
Šťastný, J. (2007):
Die Desmidiaceenflora von Pískovny Cep (Südböhmen).
Novitates Botanicae Universitatis Carolinae 18: 53-62. [PDF]
Šubrt, D. (2007): Pinnularia ferrophila - tajemná řasa pramenů železitých kyselek Karlovarského kraje. Arnika 2007/2: 18-22.
2006
Hodač, L. & Veselá, J. (2006): Řasy rašelinišť Slavkovského lesa II. Arnika 2006/1: 11-18. [WEB]
Neustupa, J. (2006): Co je to geometrická morfometrika aneb morfologie znovu na scéně. Živa 54: 54-56. [PDF]
Neustupa, J. & Šťastný, J. (2006):
The geometric morphometric study of Central European species of the genus Micrasterias (Zygnematophyceae, Viridiplantae). Preslia 78: 253-263.
[PDF]
Řezáčová, M. (2006):
Mallomonas kalinae (Synurophyceae), a new species of alga from northern Bohemia, Czech Republic.
Preslia 78: 353-358.
[PDF]
Škaloud, P. (2006):
Variation and taxonomic significance of some morphological features in European strains of Klebsormidium (Klebsormidiophyceae, Streptophyta). Nova Hedwigia 83: 533-550.
[WEB]
Škaloud, P., Řezáčová, M. & Ellegaard, M. (2006):
Spatial distribution of phytoplankton in Spring 2004 along a transect in the eastern part of the North Sea.
Journal of Oceanography 62: 717-729.
[PDF]
Veselá, J. (2006):
Benthic algal communities and their ecology in sandstone periodically desiccated brook in National Park Bohemian Switzerland (Czech Republic).
Czech Phycology 6: 99-110. [PDF]
2005
Hodač, L. (2005): Řasy rašelinišť Slavkovského lesa I. Arnika 2005/2: 24-29. [WEB]
Kalina, T. (2005):
New trends in the megasystems of Eukaryote (Review). Czech Phycology 5: 37-42.
[PDF]
Neustupa, J. (2005):
Investigations on the genus Phycopeltis (Trentepohliaceae, Chlorophyta) from South-East Asia, including the description of two new species. Cryptogamie Algologie 26: 229-242.
[PDF]
Neustupa, J. (2005):
Phenotypic plasticity of microalgal cultures in culture collections: a geometric morphometric appproach. Oceanological and Hydrobiological Studies 34: 97-107.
[PDF]
Neustupa, J. & Hodač, L. (2005):
Changes in shape of the coenobial cells of an experimental strain of Pediastrum duplex var. duplex (Chlorophyta) reared at different pHs. Preslia 77: 439-452.
[PDF]
Nováková, S. (2005): Pseudocarteria corcontica, a new quadriflagellate species (Volvocales).
Preslia 77: 453–457.
[PDF]
Řezáčová, M. & Škaloud, P. (2005):
Silica-scaled chrysophytes of Ireland. With an appendix: Geographic variation of scale shape of Mallomonas caudata. Nova Hedwigia, Beiheft 128: 101-124.
[PDF]
Škaloud, P., Neustupa, J., Radochová, B., Kubínová, L. (2005):
Confocal microscopy of chloroplast morphology and ontogeny in three strains of Dictyochloropsis (Trebouxiophyceae, Chlorophyta). Phycologia 44: 261-269. [PDF]
2004
Neustupa, J. (2004):
Two new aerophytic species of the genus Podohedra Düringer (Chlorophyceae). Archiv für Hydrobiologie/ Algological Studies 112: 1-16. [PDF]
Neustupa, J. (2004): Krásivky - mikroskopické skvosty našich vod a mokřadů. Živa 52: 12-14. [PDF]
Neustupa, J. & Škaloud, P. (2004):
Contribution to the knowledge of soil algae of two abandoned industrial sedimentation basins in Eastern Bohemia.
In: Kovář, P. (ed.), Natural recovery of man-made deposits in landscape (Biotic interactions and ore/ash-slag artificial ecosystems). - pp. 188-192, Academia, Praha. [PDF]
Nováková, S. (2004):
Spatial heterogeneity of the algal flora in subalpine mires in the eastern Krkonoše Mts (Giant Mountains; Czech Republic).
Archiv für Hydrobiologie/ Algological Studies 112: 23-37. [PDF]
Nováková, S., Němcová, Y., Neustupa, J., Řezáčová, M. & Šejnohová, L. (2004):
Silica-scaled chrysophytes in acid peat bogs of Bohemian Switzerland (Czech Republic) and Saxonian Switzerland (Germany).
Nova Hedwigia 78: 507-515. [PDF]
Nováková, S., Řezáčová, M., Němcová, Y., Neustupa, J. & Kalina, T. (2004):
Mallomonas actinoloma var. maramuresensis (Synurophyceae) - a new species in algal flora of the Czech Republic.
Novitates Botanicae Universitatis Carolinae 17: 7-10. [PDF]
Nováková, S., Walne, P.L., Kalina, T. (2004):
Contribution to the desmid flora of the Southern Appalachian Mountains (USA).
Archiv für Hydrobiologie/ Algological Studies 112: 95-104. [WEB]
Řezáčová, M., Neustupa, J. & Šejnohová, L. (2004):
Five species of Mallomonas (Synurophyceae) new to the algal flora of the Czech Republic.
Preslia 76: 175-181.
[PDF]
Řezáčová, M. & Škaloud, P. (2004):
A contribution to the knowledge of the silica-scaled chrysophytes in eastern Hungary.
Czech Phycology 4: 67-73.
[PDF]
Škaloud, P. & Radochová, B. (2004):
Confocal microscopy of the green-algal chloroplast. Czech Phycology 4: 183-190. [PDF]
2003
Němcová, Y. (2003):
Detection of cell wall structural polysaccharides by cellulase-gold and chitinase-gold complexes. Czech Phycology 3: 3-36.
[PDF]
Němcová, Y., Neustupa, J., Kalina, T. & Nováková, S. (2003):
Silica-scaled chrysophytes of the Šumava National Park and the Třeboňsko UNESCO Biosphere Reserve (Southern Bohemia, Czech Republic).
Nordic Journal of Botany 22: 375-383.
[PDF]
Němcová, Y., Neustupa, J., Kalina, T. & Nováková, S. (2003):
Silica-scaled chrysophytes of the Czech Republic. Acta Universitatis Carolinae - Biologica 47: 285-346.
Neustupa, J. (2003):
The genus Phycopeltis (Trentepohliales, Chlorophyta) from tropical Southeast Asia. Nova Hedwigia 76: 487-505. [PDF]
Neustupa, J. (2003): Šupinaté zlativky - bičíkovci ve skleněném brnění. Živa 51: 57-58. [WEB]
Neustupa, J. & Albrechtová, J. (2003):
Aerial algae on spruce needles in the Krušné hory Mts., Czech Republic. Czech Phycology 3: 161-167. [PDF]
Neustupa, J. & Šejnohová, L. (2003):
Marvania aerophytica sp. nov., a new subaerial green alga.
Biologia 58: 503-507. [PDF]
Nováková, S. (2003):
Algoflóra rašelinišť Českosaského Švýcarska.
Czech Phycology 3: 71-78. [PDF]
Nováková, S. (2003):
Ecological distribution patterns of desmid species in subalpine regions of the Krkonoše Mountains (Czech Republic).
Biologia 58: 697-700.
Pfannenschmid, F., Wimmer, V.C., Rios, R.M., Geimer, S., Haller, K., Němcová, Y. & Mages, W. (2003): Chlamydomonas DIP13 and human NA14: a new class of proteins associated with microtubule structures is involved in cell division. Journal of Cell Science 116: 1449-1462.
[PDF]
Šejnohová, L. (2003):
Sinice a řasy slepých ramen Vltavy v I. zóně Šumavského Národního parku "Vltavský luh".
Czech Phycology 3: 53-70. [PDF]
Šejnohová, L., Škaloud, P., Neustupa, J., Nováková, S., Řezáčová, M. & Ošlejšková, L. (2003):
Algae and cyanoprokaryotic species from peat bog, streams, ponds and aerial biotopes in the region of South Šumava Mts.
Czech Phycology 3: 41-52.
[PDF]
2002
Neustupa, J. (2002):
An easy method for light microscopic distinguishing of xanthophycean and eustigmatophycean strains.
Czech Phycology 2: 43-46.
[PDF]
Neustupa, J., Nováková, S., Šejnohová, L., Škaloud, P. & Řezáčová, M. (2002):
Algae from the aquatic, peat bog and aerial biotopes in the tributary of Křemelná river in Šumava National Park.
Czech Phycology 2: 47-61.
[PDF]
Nováková, S. (2002):
Algal flora of subalpine peat bog pools in the Krkonoše Mts.
Preslia 74: 45-56.
[PDF]
Nováková, S. (2002):
Pseudodendromonas vlkii - poutník po systému. Czech Phycology 2: 33-37. [PDF]
2001
Kalina, T. (2001):
Původ chloroplastů a zařazení řasových oddělení do systému organismů.
Czech Phycology 1: 1-4.
[PDF]
Kalina, T., Walne, P. & Houk, V. (2001):
Floristic notes on plankton algae of Norris Lake (Tennessee, USA).
Preslia 73: 121-126.
Němcová, Y., Kalina, T., Neustupa, J. & Nováková, S. (2001):
Silica-scaled chrysophytes of the Krkonoše Mountains (Czech Republic).
Archiv für Hydrobiologie/ Algological Studies 101: 97-108. [WEB]
Neustupa, J. (2001):
Soil algae from marlstone-substratum based biotopes in the Nature park Džbán (Central Bohemia, Czech Republic) with special attention to the natural treeless localities.
Archiv für Hydrobiologie/ Algological Studies 101: 109-120. [PDF]
Neustupa, J. (2001):
Aerofytické řasy tropického deštného lesa - zkušenosti z Malajského poloostrova.
Czech Phycology 1: 31-35. [PDF]
Neustupa, J. & Němcová, Y. (2001):
Morphological and taxonomic study of three terrestrial eustigmatophycean species. Nova Hedwigia, Beiheft 123: 373-386. [PDF]
Neustupa, J., Němcová, Y. & Kalina, T. (2001):
Silica-scaled Chrysophytes of Southern Bohemia and Českomoravská vrchovina (Czech-Moravian Highlands, Czech Republic). Archiv für Hydrobiologie/ Algological Studies 102: 23-34. [WEB]
2000
Kalina, T., Němcová, Y. & Neustupa, J. (2000):
Silica-scaled chrysophytes of the Czech Republic 1. District Česká Lípa (Nothern Bohemia) and part of the Central Bohemia.
Archiv für Hydrobiologie/ Algological Studies 96: 29-47. [WEB]
Němcová, Y. & Kalina, T. (2000):
Cell wall development, microfibril and pyrenoid structure in type strains of Chlorella vulgaris, C. kessleri, C. sorokiniana compared with C. luteoviridis (Trebouxiophyceae, Chlorophyta).
Archiv für Hydrobiologie/ Algological Studies 100: 95-105.
[PDF]
Němcová, Y., Kalina, T. & Neustupa, J. (2000):
Chrysomonády a slunivky s křemičitými šupinami montánních a subalpinských rašelinišť Krkonoš.
Opera Corcontica 37: 334-340.
[PDF]
Němcová, Y., Kalina, T., Neustupa, J. & Nováková, S. (2000):
Scale-bearing chrysophyte Mallomonas calceolus Bradley a new record from Czech Republic. Novitates Botanicae Universitatis Carolinae 13: 7-11.
[PDF]
Neustupa, J., Němcová, Y. & Kalina, T. (2000):
Mallomonas pumilio var. pumilio - a new species in algal flora of Czech Republic.
Novitates Botanicae Universitatis Carolinae 14: 7-11.
[PDF]
Nováková, S. (2000):
Řasy krkonošských rašelinišť. Opera Corcontica 37: 341-346. [PDF]
1999
Němcová, Y. (1999):
The fine structure of the xanthophycean alga Bumilleriopsis filiformis.
Acta Universitatis Carolinae - Biologica 43: 67-76.
1998
