Phycology Research Group

List of Papers

2026

Kollár, J., Van de Vijver, B., Kulichová, J., Hejduková, E., Viso, R., Kohler, T.J, Kahlert, M., Pinseel, E., Poulíčková, A., Zimmermann, J., Neustupa, J., Vyverman, W., Kopalová, K. (2026). A polyphasic taxonomy of the pseudocryptic diatom species complex Pinnularia acidicola, including description of new species. European Journal of Phycology: doi.org/10.1080/09670262.2026.2626682 [PDF]

2025

Alexandre, C.L., Němcová, Y., Fawley, M.W., Fawley, K.P. (2025): Flavoaurantia, a new genus of the Chlorobotryaceae (Eustigmatales, Eustigmatophyceae) with the single species, Flavoaurantia irregularis. Fottea 25: 183-190. [PDF]

Černajová, I., Schmidtová, J., Schiefelbein, U., Dal Grande, F. & Škaloud, P. (2025): Broad ecological niche in seashore lichens emerges from a stable, selective association with generalist algal symbionts. Ecology and Evolution 15: e72639. [WEB]

Čertnerová, D., Škaloud, P., Jadrmá, I. & Čertner, M. (2025): Large genomes are associated with greater cell size and ecological shift towards more nitrogen-rich and higher-latitude environments in microalgae of the genus Synura. Journal of Eukaryotic Microbiology 72: e70026. [PDF]

Dědková, K., Vančurová, L., Muggia, L. & Steinová, J. (2025): The plurality of photobionts within single lichen thalli. Symbiosis 95: 35-63 [PDF].

Gheza, G., Malíček, J., Vančurová, L., Feiertag, D., Nascimbene, J. & Mayrhofer, H. (2025): The epiphytic leprose Leprocaulon inexpectatum sp. nov. (Ascomycota, Leprocaulaceae) from Italy and its photosynthetic partner Symbiochloris. The Lichenologist 57: 1-12. [PDF]

Kantnerová, V. & Škaloud, P. (2025): The diverse world within: Age-dependent photobiont diversity in the lichen Protoparmeliopsis muralis. FEMS Microbiology Ecology 101: fiaf096. [PDF]

Knotek, P., Pusztai, M., Jadrná, I. & Škaloud, P. (2025): Expanding our knowledge of Synurales (Chrysophyceae) in Florida, United States: Proposing three novel Mallomonas taxa. Journal of Phycology 61: 1206-1224. [PDF]

Kulichová, J. & Pinseel, E. (2025): Biological scaling in diatoms: the adaptive nature of perforations in silica cell walls of the Pinnularia borealis species complex (Bacillariophyta). Phycologia 64: 429-440. [WEB]

Malavasi, V., Pusztai, M., Jankowska, K., Zakryś, B. & Škaloud, P. (2025): Revisiting Chrysococcus (Chrysophyceae): new phylogenetic evidence and evolutionary implications. Fottea 25: 121–127. [PDF]

Nemcova, Y., Neustupa, J. & Pichrtová, M. (2025): Desiccation tolerance in peatland desmids: a comparative study of Micrasterias thomasiana and Staurastrum hirsutum (Zygnematophyceae). Protoplasma 262: 1215–1228. [PDF]

Neustupa, J. & Nemcova, Y. (2025): The effects of small-scale heterogeneity on biomonitoring of desmid phytobenthos in Central European temperate mountain peatlands. Hydrobiologia 852: 4609–4620. [WEB]

Neustupa, J. & Woodard, K. (2025): Perianth symmetry in sexually differentiated flowers of Akebia quinata (Lardizabalaceae). PeerJ 13: e20060. [PDF]

Procházková, L., Mojzeš, P., Ráček, J., Nedbalová, L. & Remias, D. (2025): Phenolic iron complexes protect glacier ice algae (Zygnematophyceae) Against Excessive UV and VIS Irradiation. Environmental Microbiology Reports 17: e70149 [PDF]

Stancheva, R., Lewis, L.A, Hall, J., Šoljaková, T., Permann, C. & Holzinger, A. (2025): Genetic and morphological variation in the genus Zygogonium (Zygnematophyceae, Charophyta) from localities in Europe and North America and description of Z. angustum, sp. nov. Journal of Phycology 61: 587-606. [PDF]

Škaloud, P., Tučková, K., Čablová, R., Jadrná, I. & Černajová, I. (2025): High-frequency sampling unveils biotic and abiotic drivers of rapid phytoplankton morphological changes New Phytologist 248: 2528-2541. [PDF]

Škaloud, P., Škaloudová, M., Knotek, P. Jadrná, I. & Pusztai., M. (2025): Mallomonas intermedia: A case study of speciation and evolutionary dynamics of protists. Fottea 25: 169–182. [PDF]

Vondrák, J., Svoboda, S., Ríha, P., Hauser, T., Kantnerová, V., Skaloud, P. & Kubásek, J. (2025): Semilichen, an unjustly neglected symbiotic system between green biofilms and true lichens Scientific Reports 16: 927. [WEB]

2024

del Campo, J., Carlos-Oliveira, M., Čepička, I., Hehenberger, E., Horák, A., Karnkowska, A., Kolisko, M., Lara, E., Lukeš, J., Pánek, T., Piwosz, K., Richter, D.J., Škaloud, P., Sutak, R., Tachezy, J. & Hampl, V. (2024): The protist cultural renaissance. Trends in Microbiology 32: 128-131. [WEB]

Fránková, M., Soukupová, M.G., Bobek, P. & Kulichová, J. (2024): Algologický a paleoekologický průzkum vybraných minerálních pramenů CHKO Slavkovský les. Ochrana přírody 2024/2: 26-29 [PDF]

Kulichová, J. & Trobajo, R.(2024): Recent insights into diatom distributions and the contributions of molecular approaches. In: Diatom Ecology: From Molecules to Metacommunities, Maidana, N.I., Licursi, M. & Morales, E. (eds.), 123–162, Scrivener Publishing LLC, USA. [WEB]

Kulichová, J., Urbánková, P., Hamilton, P.B. (2024): The relevance of canaliculi in the identification of Frustulia species (Amphipleuraceae, Bacillariophyceae). Notulae Algarum 343: 1–3. [PDF]

Malavasi, V., Pusztai, M., Jadrná, I., Škvorová, Z. & Škaloud, P. (2024): Morphological diversity and phylogeny of the palmelloid chrysophyte genera Chrysotilos and Globulochrysis, gen. nov. European Journal of Phycology 59: 279-289 [PDF]

Němcová, Y., Knotek, P., Jadrná. I., Černajová, I. & Škaloud, P. (2024): Nanopatterns on silica scales of Mallomonas (Chrysophyceae, Stramenopiles): Unraveling UV resistance potential and diverse response to UVA and UVB radiation. Journal of Phycology 60: 1256–1272. [WEB]

Neustupa, J. & Woodard, K. (2024): The effects of temperature on plasticity, shape symmetry and seasonal variation in the freshwater benthic green microalga Micrasterias thomasiana. Aquatic Ecology 58: 601-615 [WEB]

Neustupa, J., Woodard, K., Kulichová, J. & Němcová, Y. (2024): Effects of summer desiccation on desmid microflora of ombrogenous pools in central-European mountain peat bogs. Preslia 96: 209–221. [PDF]

Puginier, C., Libourel, C., Otte, Skaloud, P., Haon, M., Grisel, S., Petersen, M., Berrin, J.-G., Delaux, P.-M., Dal Grande F. & Keller, J. (2024): Phylogenomics reveals the evolutionary origins of lichenization in chlorophyte algae. Nature Communications 15: 4452. [PDF]

Škaloud, P., Jadrná, I., Dvořák, P., Škvorová, Z., Pusztai, M., Čertnerová, D., Bestová, H., & Rengefors, K. (2024): Rapid diversification of a free-living protist is driven by adaptation to climate and habitat. Current Biology 34: 1-14. [PDF]

Vávrová, K., Nemcova, Y. & Pichrtová, M. (2024): Desiccation and temperature tolerance of green and red Haematococcus lacustris (Chlamydomonadales, Chlorophyta) akinetes. Hydrobiologia 851: 1169-1181. [PDF]

Veselá, V., Malavasi, V. & Škaloud, P. (2024): A synopsis of green-algal lichen symbionts with an emphasis on their free-living lifestyle. Phycologia 63: 317-338 [PDF]

2023

Elster, J., Souquieres C.-E., Jadrná, I., Škaloud, P., Søreide, J.E. & Kvíderová, J. (2023): Invasive Vaucheria aff. compacta (Xanthophyceae) and its distribution over a high arctic tidal flat in svalbard. Estuarine, Coastal and Shelf Science 281: #108206. [WEB]

Knotek, P. & Škaloud, P. (2023): The effect of patterned structures on the mechanical resistance of microscopic silica scales. Fottea 23: 190-200. [PDF]

Kotyk, M., Bourland, W.A., Soviš, M., Méndez-Sánchez, D., Škaloud, P., Kotyková Varadínová, Z. & Čepička, I. (2023): Morphology matters: congruence of morphology and phylogeny in the integrative taxonomy of Clevelandellidae (Ciliophora: Armophorea) with description of six new species. Zoological Journal of the Linnean Society: #zlad15. [PDF]

Nemcova, Y. & Diaz-Pulido, G. (2023): Floristic and ecological insights into silica-scaled chrysophytes in southeastern Queensland, Australia. Plant Systematics and Evolution 309: #43. [PDF]

Nemcova, Y., Faturová, J. & Škaloud, P. (2023): Comparing continental and local distribution patterns of protists: A case study of silica-scaled chrysophytes. Fottea 23: 177-189. [PDF]

Nemcova, Y., Orlando-Bonaca, M. & Neustupa, J. (2023): Halimeda tuna (Bryopsidales, Ulvophyceae) calcification on the depth transect in the northern Adriatic Sea; carbonate production on the microscale of individual segments. PeerJ 11: #e15061J. [PDF]

Neustupa, J., Stastny, J. & Woodard, K. (2023): Ecological monitoring of disturbed mountain peatlands: an analysis based on desmids. Biodiversity and Conservation 32: 2671–2691. [PDF]

Neustupa J. & Woodard, K. (2023): Spatial integration of cellular shapes in green microalgae with complex morphology, the genus Micrasterias (Desmidiales, Zygnematophyceae). Symmetry 15: #1700. [PDF]

Permann, C., Pichrtová, M., Šoljaková, T., Herburger, K., Jouneau, P-H., Uwizeye, C., Falconet, D., Marechal, E. & Holzinger, A. (2023): 3D-reconstructions of zygospores in Zygnema vaginatum (Charophyta) reveal details of cell wall formation,suggesting adaptations to extreme habitats. Physiologia Plantarum 175: #e13988. [PDF]

Pusztai, M., Jadrná, I. & Škaloud, P. (2023): Elucidating the phylogeny and taxonomic position of the genus Spiniferomonas Takahashi (Chrysophyceae). Fottea 23: 217-222. [PDF]

Sharma, B., Fatima, S., Rajeshkumar, K.C., Škaloud, P., Divakar, P.K., Gaikwad, S., Ansil, P.A., Mohan, A.S. & Sequeira, S. (2022): Molecular studies of Flavopunctelia and Punctelia species and their Trebouxia photobiont from the Himalayas, India. Mycotaxon 137: 853-869. [PDF]

Škaloud, P., Škaloudová, M., Jadrná, I., Pilátová, J., Shin, W., & Kopecký, J. (2023): Unravelling the hidden complexity in diversity and pigment composition of a colonial flagellate Synura sphagnicola (Chrysophyceae, Stramenopiles). Fottea 23: 146-163. [PDF]

Trumhová, K., Klimešová, V. & Pichrtová, M. (2023): Seasonal Dynamics of Zygnema (Zygnematophyceae) Mats from the Austrian Alps. Microbial Ecology 86: 763-776. [PDF]

2022

Barcytė, D., Pusztai, M., Škaloud, P. & Eliáš, M. (2022): When you like other algae: Adglutina synurophila gen. et sp. nov. (Moewusinia, Chlorophyceae), a clingy green microalga associated with Synura colonies. Protist 173: #125858. [WEB]

Barcytė, D., Zátopková, M., Němcová, Y., Richtář, M., Yurchenko, T., Jaške, K., Fawley, K.P, Škaloud, P., Ševčíková, T., Fawley, M.W. & Eliáš, M. (2022): Redefining Chlorobotryaceae as one of the principal and most diverse lineages of eustigmatophyte algae. Molecular Phylogenetics and Evolution 177: #107607. [WEB]

Černajová, I., Schiefelbein, U. & Škaloud, P. (2022): Lichens from the littoral zone host diverse ulvophycean photobionts. Journal of Phycology 58: 267-280. [WEB]

Černajová, I., Steinová, J., Škvorová, Z. & Škaloud, P. (2022): The curious case of Cladonia luteoalba: no support for its distinction. The Lichenologist 54: 345-354. [WEB]

Čertnerová, D., Čertner, M. & Škaloud, P. (2022): Alternating nuclear DNA content in chrysophytes provides evidence of their isomorphic haploid-diploid life cycle. Algal Research 64: #102707. [WEB]

de Araújo, C.B., de Mattos Bicudo, C.E., da Silva, T.G., Šťastný, J., Trumhová, K. & Škaloud, P. (2022): Hidden generic diversity in desmids: description of Pseudomicrasterias gen. nov. (Desmidiaceae, Zygnematophyceae). Phycologia 61: 227-240. [WEB]

Fránková, M., Soukupová, M.G., Bobek, P. & Kulichová, J. (2022): Cestování skrze prameny západočeského lázeňského trojúhelníku až do doby ledové I. Arnika 2022/1: 5-10. [PDF]

Fránková, M., Soukupová, M.G., Bobek, P. & Kulichová, J. (2022): Cestování skrze prameny západočeského lázeňského trojúhelníku až do doby ledové II. Arnika 2022/2: 7-13. [PDF]

Gusev, E., Němcová, Y. & Kulikovskiy M. (2022): Mallomonas voloshkoae sp. nov. (Synurales, Chrysophyceae) and distribution of M. pechlaneri in mountain lakes of Siberia, Phytotaxa 530: 221-229. [WEB]

Malavasi, V., Klimešová, M., Lukešová, A. & Škaloud, P. (2022): Rindifilum ramosum gen. nov., sp. nov., a new freshwater genus within the Ulvales (Ulvophyceae, Chlorophyta). Cryptogamie, Algologie 43: 125-133. [PDF]

Malavasi, V., Škvorová, Z., Němcová, Y. & Škaloud, P. (2022): Laetitia sardoa gen. & sp. nov., a new member of the Chlorellales (Trebouxiophyceae, Chlorophyta) isolated from Sardinia Island. Phycologia 61: 375-383. [WEB]

Nemcova, Y., Faturova, J. & Kreidlova, J. (2022): The new species of Mallomonas (Stramenopiles, Chrysophyceae, Synurales): Mallomonas decora sp. nov. Nova Hedwigia 114: 1-8. [PDF]

Neustupa J. & Nemcova, Y. (2022): Geometric morphometrics shows a close relationship between the shape features, position on thalli, and CaCO3 content of segments in Halimeda tuna (Bryopsidales, Ulvophyceae). Hydrobiologia 849: 2581-2594. [WEB]

Peksa, O., Gebouská, T., Škvorová, Z., Vančurová, L & Škaloud, P. (2022): The guilds in green algal lichens – an insight into the life of terrestrial symbiotic communities FEMS Microbiology Ecology 98: #fiac008. [WEB]

Pusztai, M. & Škaloud, P. (2022): Species delimitation within the colonial flagellates Uroglena, Uroglenopsis and Urostipulosphaera (Chrysophyceae). European journal of Phycology 57: 79-95. [WEB]

Steinová, J., Holien, H., Košuthová, A. & Škaloud, P.(2022): An exception to the rule? Could photobiont Identity be a better predictor of lichen phenotype than mycobiont identity? Journal of Fungi 8: #275. [PDF]

Škvorová, Z., Černajová, I., Steinová, J., Peksa, O., Moya, P., & Škaloud, P. (2022): Promiscuity in lichens follows clear rules: partner switching in Cladonia is regulated by climatic factors and soil chemistry. Frontiers in Microbiology 12: #781585. [WEB]

Woodard, K. & Neustupa, J. (2022): Geometric morphometrics of bilateral asymmetry in Eunotia bilunaris (Eunotiales, Bacillariophyceae) as a tool for the quantitative assessment of teratogenic deviations in frustule shapes. Symmetry 14: #42. [PDF]

2021

Bestová, H., Segrestin, J., von Schwartzenberg, Škaloud, P., Lenormand, T., & Violle, C. (2021): Biological scaling in green algae: the role of cell size and geometry. Scientific Reports 11: #1125. [PDF]

Čertnerová, D. (2021): Meet the challenges of analyzing small genomes using flow cytometry. Cytometry: 1-3. [PDF]

Čertnerová, D. (2021): Nuclei isolation protocols for flow cytometry allowing nuclear DNA content estimation in problematic microalgal groups. Journal of Applied Phycology 33: 2057–2067. [PDF]

Čertnerová, D. & Galbraith, D.W. (2021): Best practices in the flow cytometry of microalgae. Cytometry 99: 359-364. [PDF]

Galbraith, D., Loureiro, J., Antoniadi, I., Bainard, J., Bureš, P., Cápal, P., Castro, M., Castro, S., Čertner, M., Čertnerová, D. et al. (2021): Best practices in plant cytometry. Cytometry99: 311-317. [PDF]

Hošková, K., Pokorná, A., Neustupa, J. & Pokorný, P. (2021): Inter- and intraspecific variation in grass phytolith shape and size: a geometric morphometrics perspective. Annals of Botany 127: 191-201. [WEB]

Jadrná, I., Siver, P.A. & Škaloud, P. (2021): Morphological evolution of silica scales in the freshwater genus Synura (Stramenopiles). Journal of Phycology 57: 355-369. [PDF]

Kosecka, M., Guzow-Krzemińska, B., Černajová, I., Škaloud, P., Jabłońska, A. & Kukwa, M. (2021): New lineages of Asterochloris photobionts in Bolivian lichens expand our knowledge on habitat preferences and distribution of Asterochloris algae. Scientific Reports 11: #8701. [PDF]

Neustupa, J. & Woodard, K. (2021): Male sterility significantly elevates shape variation and fluctuating asymmetry of zygomorphic corolla in gynodioecious Glechoma hederacea L. (Lamiaceae). AoB PLANTS 13: #plab013. [PDF]

Pusztai, M. & Škaloud, P. (2021): Elucidating the evolution and diversity of Uroglena-like colonial flagellates (Chrysophyceae): polyphyletic origin of the morphotype. European journal of Phycology 54: 304-416. [WEB]

Vančurová, L., Malíček, J., Steinová, J. & Škaloud, P. (2021): Choosing the right life partner: Ecological drivers of lichen symbiosis. Frontiers in Microbiology 12: #769304. [WEB]

2020

Amaral, R., Fawley, K.P., Němcová, Y., Ševčíková, T., Lukešová, A., Fawley, M.W., Santos, L.M.A. & Eliáš, M. (2020): Towards modern classification of eustigmatophytes, including the description of Neomonodaceae, fam. nov. and three new genera. Journal of Phycology 56: 630-648. [WEB]

Arc, E., Pichrtová, M., Kranner, I. & Holzinger, A. (2020): Pre-akinete formation in Zygnema sp. from polar habitats is associated with metabolite re-arrangement. Journal of Experimental Botany 71: 3314–3322. [PDF]

Černajová, I. & Škaloud, P. (2020): Lessons from culturing lichen soredia. Symbiosis 82: 109–122. [PDF]

Čertnerová, D. & Škaloud, P. (2020): Substantial intraspecific genome size variation in golden-brown algae and its phenotypic consequences. Annals of Botany 126: 1077–1087. [PDF]

Del Cortona, A., Jackson, C.J., Bucchini, F., Van Bel, M., D’hondt, S., Škaloud, P., Delwiche, C.W., Knoll, A.H., Raven, J.A., Verbruggen, H., Vandepoele, K., De Clerck, O. & Leliaert, F. (2020): Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds. Proceedings of the National Academy of Sciences 117: 2551-2559. [PDF]

Kulichová, J. & Urbánková, P. (2020): Symmetric and asymmetric components of shape variation in the diatom genus Frustulia (Bacillariophyta). Symmetry 12: #1626. [PDF]

Neustupa, J. (2020): Gynodioecy in the common spindle tree (Euonymus europaeus L.) involves differences in the asymmetry of corolla shapes between sexually differentiated flowers. PeerJ 8: #e8571. [PDF]

Neustupa, J. & Němcová, Y. (2020): Morphometric analysis of surface utricles in Halimeda tuna (Bryopsidales, Ulvophyceae) reveals variation in their size and symmetry within individual segments. Symmetry 12: #1278. [PDF]

Neustupa, J. & Woodard, K. (2020): Geometric morphometrics reveals increased symmetric shape variation and asymmetry related to lead exposure in the freshwater green alga Micrasterias compereana. Ecological Indicators 111: #106054. [WEB]

Pichrtová, M., Hejduková, E., Nedbalová, L. & Elster, J. (2020): How to survive winter? Adaptation and acclimation strategies of eukaryotic algae from polar terrestrial ecosystems. In: di Prisco, G., Edwards, H. G. M., Elster, J. & Huiskes, A. H. L. (eds): Life in extreme environments: Insights in biological capability (Ecological reviews), Cambridge University Press, pp. 101-125. [PDF]

Schnablová, R., Neustupa, J., Woodard, K., Klimešová, J. & Herben, T. (2020): Disentangling phylogenetic and functional components of shape variation among shoot apical meristems of a wide range of herbaceous angiosperms. American Journal of Botany 107: 20-30. [PDF]

Škaloud, P., Škaloudová, M., Jadrná, I., Bestová, H., Pusztai, M., Kapustin, D. & Siver, P.A. (2020): Comparing morphological and molecular estimates of species diversity in the freshwater genus Synura (Stramenopiles): a model for understanding diversity of eukaryotic microorganisms. Journal of Phycology 56: 574-591. [PDF]

Vančurová, L., Kalníková, V., Peksa, O., Škvorová, Z., Malíček, J., Moya, P., Chytrý, K., Černajová, I. & Škaloud, P. (2020): Symbiosis between river and dry lands: Phycobiont dynamics on river gravel bars. Algal Research 51: #102062. [PDF]

2019

Černajová, I. & Škaloud, P. (2019): The first survey of Cystobasidiomycete yeasts in the lichen genus Cladonia; with the description of Lichenozyma pisutiana gen. nov., sp. nov. Fungal Biology 123: 625-637. [WEB]

Čertnerová, D., Čertner, M. & Škaloud, M. (2019): Molecular phylogeny and evolution of phenotype in silica‐scaled chrysophyte genus Mallomonas. Journal of Phycology 55: 912-923. [WEB]

Fawley, M.W., Němcová, Y. & Fawley, K.P. (2019): Phylogeny and characterization of Paraeustigmatos columelliferus, gen. et sp. nov., a member of the Eustigmatophyceae that may represent a basal group within the Eustigmatales. Fottea 19: 107–114. [PDF]

Fonseca, B.M., Feijó, L.M. & Neustupa, J. (2019): Habitat preferences of Micrasterias arcuata (Desmidiales, Viridiplantae) in wetlands from central Brazil: an allometric study. Hydrobiologia 842: 143-156. [WEB]

Holišová, V., Urban, M., Kolenčík, M., Němcová, Y., Schröfel, A., Peikertová, P., Slabotinský, J. & Kratošová, G. (2019): Biosilica-nanogold composite: Easy-to-prepare catalyst for soman degradation. Arabian Journal of Chemistry 12: 262-271. [PDF]

Kim, J.I., Shin, H., Škaloud, P., Jung, J., Yoon, H.S. & Archibald, J.M. (2019): Comparative plastid genomics of Synurophyceae: inverted repeat dynamics and gene content variation. BMC Evolutionary Biology 19: #20. [PDF]

Klimešová, K., Rindi, F. & Škaloud, P. (2019): There is more than meets the eye: DNA cloning demonstrates high genetic heterogeneity in populations of the subaerial green alga Trentepohlia (Trentepohliales, Chlorophyta). Journal of Phycology 55: 224-235. [PDF]

Kulichová, J., Neustupa, J., Vrbová, K., Levkov, Z. & Kopalová, K. (2019): Asymmetry in the genus Luticola. Diatom Research 34: 67-74. [WEB]

Nemcova, Y. & Kapustin, D. (2019): Mallomonas teres, sp. nov. (Chrysophyceae), simultaneously revealed in two distant European peat-bog regions. Cryptogamie Algologie 40: 35-39. [PDF]

Pinseel, E., Kulichová, J., Scharfen, V., Urbánková, P., Van de Vijver, B. & Vyverman, W. (2019): Extensive cryptic diversity in the terrestrial diatom Pinnularia borealis (Bacillariophyceae). Protist 170: 121-140. [WEB]

Pusztai, M. & Škaloud, P. (2019): Elucidating the evolution and diversity of Uroglena-like colonial flagellates (Chrysophyceae), polyphyletic origin of the morphotype. European Journal of Phycology 54: 401-416. [PDF]

Rippin, M., Pichrtová, M., Arc, E., Kranner, I., Becker, B. & Holzinger, A. (2019): Metatranscriptomic and metabolite profiling reveals vertical heterogeneity within a Zygnema green algal mat from Svalbard (High Arctic). Environmental Microbiology 21: 4283-4299. [PDF]

Siver, P.A., Skogstad, A. & Nemcova, Y. (2019): Endemism, palaeoendemism and migration: the case for the ‘European endemic’, Mallomonas intermedia. European Journal of Phycology 54: 222-234. [PDF]

Škaloud, P., Škaloudová, M., Doskočilová, P., Kim, J.I., Shin, W. & Dvořák, P. (2019): Speciation in protists: Spatial and ecological divergence processes cause rapid species diversification in a freshwater chrysophyte. Molecular Ecology 28: 1084-1095. [PDF]

Stancheva, R., Škaloud, P., Pusztai, M., Loflen, C.L. & Sheath, R.G. (2019): First record of the rare freshwater alga Tetrasporopsis fuscescens (Chrysomerophyceae, Ochrophyta) in North America. Fottea 19: 163-174. [PDF]

Steinová, J., Škaloud, P., Yahr, R., Bestová, H. & Muggia, L. (2019): Reproductive and dispersal strategies shape the diversity of mycobiont-photobiont association in Cladonia lichens. Molecular Phylogenetics and Evolution 134: 226-237. [PDF]

Trumhová, K., Holzinger, A., Obwegeser, S., Neuner, G. & Pichrtová, M. (2019) The conjugating green alga Zygnema sp. (Zygnematophyceae) from the Arctic shows high frost Tolerance in mature cells (Pre-Akinetes). Protoplasma 256: 1681-1694. [WEB]

Vilchis, M.I., Neustupa, J., Dreckmann, K., Quintanar, A. & Sentíes, A. (2019): Discrimination of the species of the Crassiphycus corneus/C. usneoides complex (Gracilariaceae, Rhodophyta) through geometric morphometric analysis. Nova Hedwigia 109: 291-301. [WEB]

2018

Bestová, H., Munoz, F., Svoboda, P, Škaloud P. & Violle C. (2018): Ecological and biogeographical drivers of freshwater green algae biodiversity: from local communities to large-scale species pools of desmids. Oecologia 186: 1017–1030. [PDF]

Gusev, E.S., Čertnerová, D., Škaloudová, M. & Škaloud, P. (2018): Exploring cryptic diversity and distribution patterns in the Mallomonas kalinae/rasilis species complex with a description of a new taxon — Mallomonas furtiva sp. nov.: Journal of Eukaryotic Microbiology: 65: 38-47. [WEB]

Hansen, G., Šťastný, J., Moestrup, Ø. & Lundholm, N. (2018): Diversity and conservation of desmids in Bornholm, Denmark – revisiting after 130 years. Nordic Journal of Botany 36: #e01994. [WEB]

Holzinger, A., Albert, A., Aigner, S., Uhl, J., Schmitt-Kopplin, P., Trumhová K. & Pichrtová, M. (2018): Arctic, Antarctic, and temperate green algae Zygnema spp. under UV-B stress: vegetative cells perform better than pre-akinetes. Protoplasma 255: 1239-1252. [PDF]

Kaštovský, J., Hauer, T., Geriš, R., Chattová, B., Juráň, J., Lepšová-Skácelová, O., Pitelková, P., Puzstai, M., Škaloud, P., Šťastný, J., Čapková, K., Bohunická, M. & Mühlsteinová, R. (2018) Atlas sinic a řas České republiky I. Vydavatel: Powerprint, Praha. 1-383. ISBN 978-80-7568-125-6. [PDF]

Kaštovský, J., Hauer, T., Geriš, R., Chattová, B., Juráň, J., Lepšová-Skácelová, O., Pitelková, P., Puzstai, M., Škaloud, P., Šťastný, J., Čapková, K., Bohunická, M. & Mühlsteinová, R. (2018): Atlas sinic a řas České republiky II. Vydavatel: Powerprint, Praha. 1-479. ISBN 978-80-7568-125-6. [PDF]

Moya, P., Chiva, S., Molins, A., Jadrná, I., Škaloud, P., Peksa, O. & Barreno, E. (2018): Myrmecia israeliensis as the primary symbiotic microalga in squamulose lichens growing in European and Canarian terricolous communities. Fottea 18: 72-85. [PDF]

Němcová, Y. & Rott, E. (2018): Diversity of silica-scaled chrysophytes in high-altitude Alpine sites (North Tyrol, Austria) including a description of Mallomonas pechlaneri sp. nov. Cryptogamie, Algologie 39: 63-83. [PDF]

Neustupa, J. (2018): Algologie a protistologie na Německé univerzitě v Praze v meziválečném období I. Adolf Pascher a jeho odkaz. Dějiny věd a techniky 50: 234-258. [PDF]

Neustupa, J. (2018): Algologie a protistologie na Německé univerzitě v Praze v meziválečném období II. Ernst Georg Pringsheim a Institut pro rostlinnou fyziologii. Dějiny věd a techniky 51: 169-196. [PDF]

Neustupa, J. & Němcová, Y. (2018): Morphological allometry constrains symmetric shape variation, but not asymmetry, of Halimeda tuna (Bryopsidales, Ulvophyceae) segments. Plos ONE 13: #e0206492. [PDF]

Neustupa, J. & Šťastný, J. (2018): Symmetry breaking of the cellular lobes closely relates to phylogenetic structure within green microalgae of the Micrasterias lineage (Zygnematophyceae). PeerJ 6: #e6098. [PDF]

Pichrtová, M., Holzinger, A., Kulichová, J., Ryšánek, D., Šoljaková, T., Trumhová, K. & Němcová, Y. (2018): Molecular and morphological diversity of Zygnema and Zygnemopsis (Zygnematophyceae, Streptophyta) on Svalbard (High Arctic). European Journal of Phycology 53: 492-508. [PDF]

Procházková, K., Němcová, Y. & Neustupa, J. (2018): Phyllosiphon duini sp. nov. (Trebouxiophyceae, Chlorophyta), a species isolated from a corticolous phototrophic biofilm. Cryptogamie, Algologie 39: 23-34. [PDF]

Svoboda, P., Lindström, E.S., Osman, O.A. & Langenheder, S. (2018): Dispersal timing determines the importance of priority effects in bacterial communities. The ISME Journal 12: 644–646. [PDF]

Škaloud, P., Moya, P., Molins, A., Peksa, O., Santos-Guerra, A. & Barreno, E. (2018): Untangling the hidden intrathalline microalgal diversity in Parmotrema pseudotinctorum: Trebouxia crespoana sp. nov. The Lichenologist 50: 357-369. [PDF]

Škaloud, P., Rindi, F., Boedeker, C. & Leliaert, F. (2018): Freshwater Flora of Central Europe, Vol 13: Chlorophyta: Ulvophyceae, Springer Spektrum. - 289 pp. [WEB]

Vančurová, L., Muggia, L., Peksa, O., Řídká, T. & Škaloud, P. (2018): The complexity of symbiotic interactions influences the ecological amplitude of the host: a case study in Stereocaulon (lichenized Ascomycota). Molecular Ecology 27: 3016-3033. [PDF]

2017

Donner, A., Ryšánek, D., Mikhailyuk, T. & Karsten, U. (2017): Ecophysiological traits of various genotypes of a green key alga in biological soil crusts from the semi-arid Colorado Plateau, USA. Journal of Applied Phycology 29: 2911-2923. [PDF]

Kristiansen, J. & Škaloud, P. (2017): Chrysophyta. In: Archibald, J.M., Simpson, A.G.B., Slamovits C.H. (eds.), Handbook of the Protists, Second Edition. - pp. 331-366, Springer International Publishing. [PDF]

Mutinová, P.T., Kulichová, J. & Ugland, K.I. (2017): Temporal and spatial dynamics of diatom (Bacillariophyceae) communities in a peatland area. Cryptogamie, Algologie 38: 253-266. [PDF]

Neustupa, J. (2017): Asymmetry and integration of cellular morphology in Micrasterias compereana. BMC Evolutionary Biology 17: 1. [PDF]

Pierangelini, M., Ryšánek, D., Lang, I., Adlassnig, W. & Holzinger, A. (2017): Terrestrial adaptation of green algae Klebsormidium and Zygnema (Charophyta) involves diversity in photosynthetic traits but not in CO2 acquisition. Planta 246: 971-986. [WEB]

Rindi, F., Ryšánek, D. & Škaloud, P. (2017): Problems of epitypification in morphologically simple green microalgae: a case study of two widespread species of Klebsormidium (Klebsormidiophyceae, Streptophyta). Fottea 17: 78-88. [PDF]

Škaloud, P. & Leliaert, F. (2017): Validation of the genus Hazenia H.C.Bold 1958 (Ulvophyceae). Notulae Algarum 41: 1-4.

Štifterová, A. & Neustupa, J. (2017): Small-scale variation of corticolous microalgal covers: Effects of microhabitat, season, and space. Phycological Research 65: 299-311. [WEB]

Tájek, P., Vrbová, K. & Kulichová, J. (2017): Nové nálezy vzácné endemické rozsivky Pinnularia ferrophila. Arnika 2017/2: 30-34. [WEB]

2016

Eliáš, M., Amaral, R., Fawley, K.P., Fawley, M.W., Němcová, Y.; Neustupa, J.; Přibyl, P.; Santos, L.M.A & Ševčíková, T. (2016): Eustigmatophyceae. In: Archibald, J.M., Simpson, A.G.B., Slamovits, C. (eds.), Handbook of Protists, pp. 1-39, Springer. [WEB]

Holzinger, A. & Pichrtová, M. (2016): Abiotic stress tolerance in charophyte green algae: New challenges for omics techniques. Frontiers in Plant Science 7 (678): 1-17. [PDF]

Jo, B.Y., Kim, J.I., Škaloud, P., Siver, P.A. & Shin, W. (2016): Multigene phylogeny of Synura (Synurophyceae) and descriptions of four new species based on morphological and DNA evidence. European Journal of Phycology 51: 413-430. [PDF]

Kulichová, J. & Fialová, M. (2016): Correspondence between morphology and ecology: morphological variation of the Frustulia crassinervia-saxonica species complex (Bacillariophyta) reflects the ombro-minerotrophic gradient. Cryptogamie, Algologie 37: 15-28. [WEB]

Malavasi, V., Škaloud, P., Rindi, F., Tempesta, S., Paoletti, M. & Pasqualetti, M. (2016): DNA-based taxonomy in ecologically versatile microalgae: A re-evaluation of the species concept within the coccoid green algal genus Coccomyxa (Trebouxiophyceae, Chlorophyta) PLoS ONE 11: #e0151137. [PDF]

Mutinová, P.T., Neustupa, J., Bevilacqua, S. & Terlizzi, A. (2016): Host specificity of epiphytic diatom (Bacillariophyceae) and desmid (Desmidiales) communities. Aquatic Ecology 50: 697-709. [PDF]

Němcová, Y., Pusztai, M., Škaloudová, M. & Neustupa, J. (2016): Silica-scaled chrysophytes (Stramenopiles, Ochrophyta) along a salinity gradient: a case study from the Gulf of Bothnia western shore (northern Europe). Hydrobiologia 764: 187–197. [PDF]

Neustupa, J. (2016): Static allometry of unicellular green algae: scaling of cellular surface area and volume in the genus Micrasterias (Desmidiales). Journal of Evolutionary Biology 29: 292–305. [WEB]

Pichrtová, M., Arc, E., Stöggl, W., Kranner, I., Hájek, T., Hackl, H. & Holzinger, A. (2016): Formation of lipid bodies and changes in fatty acid composition upon pre-akinete formation in Arctic and Antarctic Zygnema (Zygnematophyceae, Streptophyta) strains. FEMS Microbiology Ecology 92: #fiw096. [PDF]

Pichrtová, M., Hájek, T. & Elster, J. (2016): Annual development of mat-forming conjugating green algae Zygnema spp. in hydroterrestrial habitats in the Arctic. Polar Biology 39: 1653-1662. [PDF]

Poulíčková, A., Neustupa, J., Hašler, P., Tomanec, O. & Cox, E.J. (2016): A new species, Navicula lothargeitleri sp. nov., within the Navicula cryptocephala complex (Bacillariophyceae). Phytotaxa 273: 23-33. [WEB]

Procházková, K., Němcová, Y. & Neustupa, J. (2016): Phyllosiphon ari sp. nov. (Watanabea clade, Trebouxiophyceae), a new parasitic species isolated from leaves of Arum italicum (Araceae). Phytotaxa 283: 143–154. [PDF]

Pusztai, M., Čertnerová, D., Škaloudová, M. & Škaloud, P. (2016): Elucidating the phylogeny and taxonomic position of the genus Chrysodidymus Prowse (Chrysophyceae, Synurales). Cryptogamie, Algologie 37: 297-307. [PDF]

Remias, D., Pichrtová, M., Pangratz, M., Lütz, C. & Holzinger, A. (2016): Ecophysiology, secondary pigments and ultrastructure of Chlainomonas sp. (Chlorophyta) from the European Alps compared with Chlamydomonas nivalis forming red snow. FEMS Microbiology Ecology 92: #fiw030. [PDF]

Ryšánek, D., Elster, J., Kováčik, L. & Škaloud, P. (2016): Diversity and dispersal capacities of a terrestrial algal genus Klebsormidium (Streptophyta) in polar regions. FEMS Microbiology Ecology 92: #fiw039. [PDF]

Ryšánek, D., Holzinger, A. & Škaloud, P. (2016): Influence of substrate and pH on the diversity of aeroterrestrial alga Klebsormidium (Klebsormidiales, Streptohyta): a potentially important factor for sympatric speciation. Phycologia 55: 347-358. [PDF]

Škaloud, P., Friedl, T., Hallmann, C., Beck, A. & Dal Grande, F. (2016): Taxonomic revision and species delimitation of coccoid green algae currently assigned to the genus Dictyochloropsis (Trebouxiophyceae, Chlorophyta). Journal of Phycology 52: 599-617. [PDF]

Urbánková, P., Scharfen, V. & Kulichová, J. (2016): Molecular and automated identification of the diatom genus Frustulia in northern Europe. Diatom Research 31: 217-229. [PDF]

Woodard, K., Kulichová, J., Poláčková, T. & Neustupa, J. (2016): Morphometric allometry of representatives of three naviculoid genera throughout their life cycle. Diatom Research 31: 231-242. [PDF]

Woodard, K. & Neustupa, J. (2016): Morphometric asymmetry of frustule outlines in the pennate diatom Luticola poulickovae (Bacillariophyceae). Symmetry 8: #150. [PDF]

2015

Moya, P., Škaloud, P., Chiva, S., García-Breijo, F.J., Reig-Armiñana, J. Vančurová, L. & Barreno, E. (2015): Molecular phylogeny and ultrastructure of the lichen microalga Asterochloris mediterranea sp. nov. from Mediterranean and Canary Islands ecosystems. International Journal of Systematic and Evolutionary Microbiology 65: 1838-1854. [PDF]

Němcová, Y., Pichrtová, M. & Zeisek, V. (2015): Mallomonas alpestrina sp. nov. (Synurales, Chrysophyceae, Stramenopiles) and its spineless relatives—Mallomonas alata group. Phytotaxa 222: 111–120. [PDF]

Nováková, R. & Neustupa, J. (2015): Microalgal biofilms on common yew needles in relation to anthropogenic air pollution in urban Prague, Czech Republic. Science of the Total Environment 508: 7-12. [PDF]

Procházková, K., Němcová, Y., Kulichová, J. & Neustupa, J. (2015): Morphology and phylogeny of parasitic and free-living members of the genus Phyllosiphon (Trebouxiophyceae, Chlorophyta). Nova Hedwigia 101: 501-518. [WEB]

Procházková, K., Němcová, Y. & Neustupa, J. (2015): A new species Jenufa aeroterrestrica (Chlorophyceae incertae sedis, Viridiplantae), described from Europe. Preslia 87: 403–416. [PDF]

Ryšánek, D., Hrčková, K. & Škaloud, P. (2015): Global ubiquity and local endemism of free-living terrestrial protists: phylogeographic assessment of the streptophyte alga Klebsormidium. Environmental Microbiology 17: 689-698. [PDF]

Škaloud, P., Steinová, J., Řídká, T., Vančurová, L. & Peksa, O. (2015): Assembling the challenging puzzle of algal biodiversity: species delimitation within the genus Asterochloris (Trebouxiophyceae, Chlorophyta). Journal of Phycology 51: 507-527. [PDF]

Štifterová, A. & Neustupa, J. (2015): Community structure of corticolous microalgae within a single forest stand: evaluating the effects of bark surface pH and tree species. Fottea 15: 113-122. [PDF]

Urbánková, P., Kulichová, J. & Kilroy, C. (2015): Frustulia curvata and Frustulia paulii, two diatom species new to science. Diatom Research 30: 65-73. [WEB]

Vančurová, L., Peksa, O., Němcová, Y., & Škaloud, P. (2015): Vulcanochloris (Trebouxiales, Trebouxiophyceae), a new genus of lichen photobiont from La Palma, Canary Islands, Spain. Phytotaxa 219: 118-132. [PDF]

Wierzchos, J., DiRuggiero, J., Vítek., P., Artieda, O., Souza-Egipsy, V., Škaloud, P., Tisza, M., Davila, A.F., Vílchez, C., Garbayo, I. & Ascaso, C. (2015): Adaptation strategies of endolithic chlorophototrophs to survive the hyperarid and extreme solar radiation environment of the Atacama Desert. Frontiers in Microbiology 6: #934. [PDF]

Yahr, R., Florence, A., Škaloud, P. & Voytsekhovich, A. (2015): Molecular and morphological diversity in photobionts associated with Micarea s. str. (Lecanorales, Ascomycota). The Lichenologist 47: 403-414. [PDF]

2014

Drahota, P., Škaloud, P., Nováková, B. & Mihaljevič, M. (2014): Comparison of Pb, Zn, Cd, As, Cr, Mo and Sb adsorption onto natural surface coatings in a stream draining natural as geochemical anomaly. Bulletin of Environmental Contamination and Toxicology 93: 311-315. [PDF]

Fučíková, K., Leliaert, F., Cooper, E.D., Škaloud, P., D'Hondt, S., De Clerck, O., Gurgel, C.F.D, Lewis, L.A., Lewis, P.O., Lopez-Bautista, J.M., Delwiche, C.F. & Verbruggen, H. (2014): New phylogenetic hypotheses for the core Chlorophyta based on chloroplast sequence data. Frontiers in Ecology and Evolution 2: #63. [PDF]

Jurdíková, K., Kulichová, J., Bestová, H., Leliaert, F. & Škaloud, P. (2014): Exploration of nuclear DNA markers for population structure assessment in the desmid Micrasterias rotata (Zygnematophyceae, Streptophyta). Journal of Eukaryotic Microbiology 61: 509-519. [WEB]

Kulichová, J., Škaloud, P. & Neustupa, J. (2014): Molecular diversity of green corticolous microalgae from two submediterranean European localities. European Journal of Phycology 49: 345-355. [PDF]

Němcová, Y. (2014): Silica-scaled chrysophytes (Chrysophyceae, Stramenopiles) of the Istrian Peninsula (Slovenia, Croatia) – species flourishing in humid subtropical climate). Nordic Journal of Botany 32: 875-880. [PDF]

Neustupa, J., Šťastný, J. & Škaloud, P. (2014): Splitting of Micrasterias fimbriata (Desmidiales, Viridiplantae) into two monophyletic species and description of Micrasterias compereana sp. nov. Plant Ecology and Evolution 147: 405-411. [PDF]

Pichrtová, M., Hájek, T. & Elster, J. (2014): Osmotic stress and recovery in field populations of Zygnema sp. (Zygnematophyceae, Streptophyta) on Svalbard (High Arctic) subjected to natural desiccation. FEMS Microbiology Ecology 89: 270-280. [PDF]

Pichrtová, M., Kulichová, J. & Holzinger, A. (2014): Nitrogen limitation and slow drying induce desiccation tolerance in conjugating green algae (Zygnematophyceae, Streptophyta) from polar habitats. Plos ONE 9: #e113137. [PDF]

Poulíčková, A., Mazalová, P., Vašut, R.J., Šarhanová, P., Neustupa, J. & Škaloud, P. (2014): DNA content variation and its significance in the evolution of the genus Micrasterias (Desmidiales, Streptophyta). Plos ONE 9: #e86247. [PDF]

Řídká, T., Peksa, O., Rai, H., Upreti, D.K. & Škaloud, P. (2014): Photobiont diversity in Indian Cladonia lichens, with special emphasis on the geographical patterns. In: Rai, H. & Upreti, D.K. (eds.), Terricolous lichens in India. - pp. 53-71, Springer, New York. [PDF]

Škaloud, P., Lukešová, A., Malavasi, V., Ryšánek, D., Hrčková, K. & Rindi, F. (2014): Molecular evidence for the polyphyletic origin of low pH adaptation in the genus Klebsormidium (Klebsormidiophyceae, Streptophyta). Plant Ecology and Evolution 147: 333-345. [PDF]

Škaloud, P., Němcová, Y., Pytela, J., Bogdanov, N.I., Bock, C. & Pickinpaugh, S.H. (2014): Planktochlorella nurekis, gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid green alga carrying significant biotechnological potential. Fottea 14: 53-62. [PDF]

Škaloud, P., Škaloudová, M., Procházková, A. & Němcová, Y. (2014): Morphological delineation and distribution patterns of four newly described species within the Synura petersenii species complex (Chrysophyceae, Stramenopiles). European Journal of Phycology 49: 213-229. [PDF]

Svoboda, P., Kulichová, J. & Šťastný, J. (2014): Spatial and temporal community structure of desmids on a small spatial scale. Hydrobiologia 722: 291-303. [PDF]

Valentova, J.V., Kleisner, K., Havlíček, J. & Neustupa, J. (2014): Shape differences between the faces of homosexual and heterosexual men. Archives of Sexual Behavior 43: 353-361. [PDF]

2013

Eliáš, M., Neustupa, J., Pažoutová, M. & Škaloud, P. (2013): A case of taxonomic inflation in coccoid algae: Ellipsoidion parvum and Neocystis vischeri are conspecific with Neocystis (=Nephrodiella) brevis (Chlorophyta, Trebouxiophyceae). Phytotaxa 76: 15-27. [WEB]

Gaysina, L., Němcová, Y., Škaloud, P., Ševčíková, T. & Eliáš, M. (2013): Chloropyrula uraliensis gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a new green coccoid alga with a unique ultrastructure, isolated from soil in South Urals. Journal of Systematics and Evolution 51: 476-484. [PDF]

Kaufnerová, V. & Eliáš, M. (2013): The demise of the genus Scotiellopsis Vinatzer (Chlorophyta). Nova Hedwigia 97: 415-428. [PDF]

Muggia, L., Vančurová, L., Škaloud, P., Peksa, O., Wedin, M. & Grube, M. (2013): The symbiotic playground of lichen thalli – a highly flexible photobiont association in rock-inhabiting lichens. FEMS Microbiology Ecology 85:313–323. [PDF]

Neustupa, J. (2013): Patterns of symmetric and asymmetric morphological variation in unicellular green microalgae of the genus Micrasterias (Desmidiales, Viridiplantae). Fottea 13: 53-63. [PDF]

Neustupa, J., Němcová, Y., Veselá, J., Steinová, J. & Škaloud, P. (2013): Leptochlorella corticola gen. et sp. nov. and Kalinella apyrenoidosa sp. nov.: two novel Chlorella-like green microalgae (Trebouxiophyceae, Chlorophyta) from subaerial habitats. International Journal of Systematic and Evolutionary Microbiology 63: 377-387. [PDF]

Neustupa, J., Němcová, Y., Veselá, J., Steinová, J. & Škaloud, P. (2013): Parachloroidium gen. nov. (Trebouxiophyceae, Chlorophyta), a novel genus of coccoid green algae from subaerial corticolous biofilms. Phycologia 52: 411-421. [PDF]

Neustupa, J. & Štifterová, A. (2013): Distribution patterns of subaerial corticolous microalgae in two European regions. Plant Ecology and Evolution 146: 279–289. [PDF]

Neustupa, J., Veselá, J. & Šťastný, J. (2013): Differential cell size structure of desmids and diatoms in the phytobenthos of peatlands. Hydrobiologia 709: 159-171. [PDF]

Němcová, Y. & Kreidlová, J. (2013): Two new species of Mallomonas (Chrysophyceae: Synurales): Mallomonas temonis and Mallomonas divida. Phytotaxa 87: 11-18. [PDF]

Němcová, Y., Kreidlová, J., Pusztai, M. & Neustupa, J. (2013): Mallomonas pumilio group (Chrysophyceae/Stramenopiles) – a revision based on the scale/scale-case morphology and analysis of scale shape. Nova Hedwigia, Beiheft 142: 27-49. [WEB]

Pichrtová, M., Němcová, Y., Škaloud, P. & Rott, E. (2013): Silica-scaled chrysophytes from North Tyrol (Austria) including a description of Mallomonas tirolensis sp. nov. Nova Hedwigia, Beiheft 142: 69-85. [WEB]

Pichrtová, M., Remias, D., Lewis, L. A. & Holzinger, A. (2013): Changes in phenolic compounds and cellular ultrastructure of Arctic and Antarctic strains of Zygnema (Zygnematophyceae, Streptophyta) after exposure to experimentally enhanced UV to PAR ratio. Microbial Ecology 65: 68-83. [PDF]

Poulíčková, A., Bergová, K., Hnilica, R. & Neustupa, J. (2013): Epibryic diatoms from ombrotrophic mires: diversity, gradients and indicating options. Nova Hedwigia 96: 351-365. [PDF]

Steinová, J., Stenroos, S., Grube, M. & Škaloud, P. (2013): Genetic diversity and species delimitation of the zeorin-containing red-fruited Cladonia species (lichenized Ascomycota) assessed with ITS rDNA and β-tubulin data. The Lichenologist 45: 665-684. [PDF]

Škaloud, P. & Rindi, F. (2013): Ecological differentiation of cryptic species within an asexual protist morphospecies: a case study of filamentous green alga Klebsormidium (Streptophyta). Journal of Eukaryotic Microbiology 60: 350-362. [PDF]

Škaloud, P., Kalina, T., Nemjová, K., De Clerck, O. & Leliaert, F. (2013): Morphology and phylogenetic position of the freshwater green microalgae Chlorochytrium (Chlorophyceae) and Scotinosphaera (Scotinosphaerales, ord. nov., Ulvophyceae). Journal of Phycology 49: 115-129. [PDF]

Škaloud, P., Kristiansen, J. & Škaloudová, M. (2013): Developments in the taxonomy of silica-scaled chrysophytes – from morphological and ultrastructural to molecular approaches (review). Nordic Journal of Botany 31: 385-402. [PDF]

Škaloud, P., Nedbalová, L., Elster, J. & Komárek, J. (2013): A curious occurrence of Hazenia broadyi spec. nova in Antarctica, and the review of the genus Hazenia (Ulotrichales, Chlorophyceae). Polar Biology 36: 1281-1291. [WEB]

Škaloud, P., Škaloudová, M., Pichrtová, M., Němcová, Y., Kreidlová, J. & Pusztai, M. (2013): www.chrysophytes.eu – a database on distribution and ecology of silica-scaled chrysophytes in Europe. Nova Hedwigia, Beiheft 142: 141-146. [PDF]

Škaloudová, M. & Škaloud, P. (2013): A new species of Chrysosphaerella (Chrysophyceae: Chromulinales), Chrysosphaerella rotundata, sp. nov., from Finland. Phytotaxa 130: 34-42. [PDF]

Šťastný, J., Škaloud, P., Langenbach, D., Nemjová, K. & Neustupa, J. (2013): Polyphasic evaluation of Xanthidium antilopaeum and Xanthidium cristatum (Zygnematophyceae, Streptophyta) species complex. Journal of Phycology 49: 401-416. [PDF]

Urbánková, P. & Veselá, J. (2013): DNA-barcoding: A case study in the diatom genus Frustulia (Bacillariophyceae). Nova Hedwigia, Beiheft 142: 147-162. [WEB]

Van de Vijver, B., Moravcová, A., Kusber, W.H. & Neustupa, J. (2013): Analysis of the type material of Pinnularia divergentissima (Grunow in Van Heurck) Cleve (Bacillariophyceae). Fottea 13: 1-14. [PDF]

2012

Přibyl, P., Eliáš, M., Cepák, V., Lukavský, J. & Kaštánek, P. (2012): Zoosporogenesis, morphology, ultrastructure, pigment composition, and phylogenetic position of Trachydiscus minutus (Eustigmatophyceae, Heterokontophyta). Journal of Phycology 48: 231-242. [PDF]

Neustupa, J., Černá, K. & Šťastný, J. (2012): Spatio-temporal community structure of peat bog benthic desmids on a microscale. Aquatic Ecology 46: 229-239. [PDF]

Němcová, Y. & Pichrtová, M. (2012): Shape dynamics of silica scales (Chrysophyceae, Stramenopiles) associated with pH. Fottea 12: 281-291. [PDF]

Němcová, Y., Kreidlová, J., Kosová, A. & Neustupa, J. (2012): Lakes and pools of Aquitaine region (France) - a biodiversity hotspot of Synurales in Europe. Nova Hedwigia 95: 1-24. [PDF]

Škaloud, P., Kynčlová, A., Benada, O., Kofroňová, O. & Škaloudová, M. (2012): Toward a revision of the genus Synura, section Petersenianae (Synurophyceae, Heterokontophyta): morphological characterization of six pseudo-cryptic species. Phycologia 51: 303-329. [PDF]

Škaloud, P., Šťastný, J., Nemjová, K., Mazalová, P., Poulíčková, A. & Neustupa, J. (2012): Molecular phylogeny of baculiform desmid taxa (Zygnematophyceae). Plant Systematics and Evolution 298: 1281-1292. [PDF]

Šťastný, J. & Kouwets, F.A.C. (2012): New and remarkable desmids (Zygnematophyceae, Streptophyta) from Europe: taxonomical notes based on LM and SEM observations. Fottea 12: 293-313. [PDF]

Veselá, J., Urbánková, P., Černá, K. & Neustupa, J. (2012): Ecological variation within traditional diatom morphospecies: diversity of Frustulia rhomboides sensu lato (Bacillariophyceae) in European freshwater habitats. Phycologia 51: 552-561. [PDF]

2011

Banks, J.A., Nishiyama, T., Hasebe M. + 100 additional authors incl. Elias, M. (2011): The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 332: 960-963. [WEB]

Němcová, Y., Bulant, P. & Kristiansen, J. (2011): Mallomonas solea-ferrea and Mallomonas siveri (Chrysophyceae/Synurophyceae): two new taxa from the Western Cape (South Africa). Nova Hedwigia 93: 375-384. [PDF]

Němcová, Y., Eliáš, M., Škaloud, P., Hodač, L. & Neustupa, J. (2011): Jenufa, gen. nov.: a new genus of coccoid green algae (Chlorophyceae, incertae sedis) previously recorded by environmental sequencing. Journal of Phycology 47: 928-938. [PDF]

Nemjová, K., Neustupa, J., Šťastný, J., Škaloud, P. & Veselá, J. (2011): Species concept and morphological differentiation of strains traditionally assigned to Micrasterias truncata. Phycological Research 59: 208-220. [PDF]

Neustupa, J., Černá, K. & Šťastný, J. (2011): The effects of aperiodic desiccation on the diversity of benthic desmid assemblages in a lowland peat bog. Biodiversity and Conservation 20: 1695-1711. [PDF]

Neustupa, J., Eliáš, M., Škaloud, P., Němcová, Y. & Šejnohová, L. (2011): Xylochloris irregularis, gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccoid green alga. Phycologia 50: 57-66. [PDF]

Neustupa, J., Šťastný, J., Nemjová, K., Mazalová, P., Goodyer, E., Poulíčková, A. & Škaloud, P. (2011): A novel, combined approach to assessing species delimitation and biogeography within the well-known desmid species Micrasterias fimbriata and M. rotata (Desmidiales, Steptophyta). Hydrobiologia 667: 223-239. [PDF]

Peksa, O. & Škaloud, P. (2011): Do photobionts influence the ecology of lichens? A case study of environmental preferences in symbiotic green alga Asterochloris (Trebouxiophyceae). Molecular Ecology 20: 3936-3948. [PDF]

Pichrtová, M. & Němcová, Y. (2011): Effect of temperature on size and shape of silica scales in Synura petersenii and Mallomonas tonsurata (Stramenopiles). Hydrobiologia 673: 1-11. [PDF]

Pichrtová, M., Janatková, K. & Němcová, Y. (2011): Silica-scaled chrysophytes from Abisko (Swedish Lapland). Nordic Journal of Botany 29: 112-118. [PDF]

Škaloud, P., Nemjová, K., Veselá, J., Černá, K. & Neustupa, J. (2011): A multilocus phylogeny of the desmid genus Micrasterias (Streptophyta): Evidence for the accelerated rate of morphological evolution in protists. Molecular Phylogenetics and Evolution 61: 933-943. [PDF]

Sucgang, C. et al. incl. Eliáš, M. (2011): Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum. Genome Biology 12: #R20. [PDF]

Svoboda, D., Peksa, O. & Veselá, J. (2011): Analysis of the species composition of epiphytic lichens in Central European oak forests. Preslia 83: 129-144. [WEB]

Veselá, J., Škaloud, P., Urbánková, P., Škaloudová, M. & Kalina, T. (2011:) The CAUP image database. Fottea 11: 313-316. [PDF]

Vlahou, G., Eliáš, M., von Kleist-Retzov, J.C., Wiesner, R.J. & Rivero, F. (2011): The Ras related GTPase Miro is not required for mitochondrial transport in Dictyostelium discoideum. European Journal of Cell Biology 90: 342-355. [PDF]

2010

Bačkor, M., Peksa, O., Škaloud, P. & Bačkorová, M. (2010): Photobiont diversity in lichens from metal-rich substrata based on ITS rDNA sequences. Ecotoxicology and Environmental Safety 73: 603-612. [PDF]

Černá, K. (2010): Small-scale spatial variation of benthic algal assemblages in a peat bog. Limnologica 40: 315-321. [PDF]

Černá, K. & Neustupa, J. (2010): The pH-related morphological variations of two acidophilic species of Desmidiales (Viridiplantae) isolated from a lowland peat bog, Czech Republic. Aquatic Ecology 44: 409-419. [PDF]

Cock, J.M., Sterck, L., Rouzé, P., Scornet, D. + 70 additional authors incl. Elias, M. (2010): The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature 465: 617-621. [WEB]

Elias, M. (2010): Patterns and processes in the evolution of the eukaryotic endomembrane system. Molecular Membrane Biology 27: 469-489. [PDF]

Eliáš, M., Němcová, Y., Škaloud, P., Neustupa, J., Kaufnerová, V. & Šejnohová, L. (2010): Hylodesmus singaporensis gen. et sp. nov., a new autosporic subaerial green alga (Scenedesmaceae, Chlorophyta) from Singapore. International Journal of Systematic and Evolutionary Microbiology 60: 1224-1235. [PDF]

Kynčlová, A., Škaloud, P. & Škaloudová, M. (2010): Unveiling hidden diversity in the Synura petersenii species complex (Synurophyceae, Heterokontophyta). Nova Hedwigia, Beiheft 136: 283-298. [PDF]

Němcová, Y. (2010): Diversity and ecology of silica-scaled chrysophytes (Synurophyceae, Chrysophyceae) in the National Nature Monument Swamp and Brehynsky Pond, Czech Republic. Cryptogamie, Algologie 31: 229-243. [PDF]

Němcová, Y., Neustupa, J., Kvíderová, J. & Řezáčová-Škaloudová, M. (2010): Morphological plasticity of silica scales of Synura echinulata (Synurophyceae) in crossed gradients of light and temperature – a geometric morphometric approach. Nova Hedwigia, Beiheft 136: 21-32. [WEB]

Neustupa, J. & Škaloud, P. (2010): Diversity of subaerial algae and cyanobacteria growing on bark and wood in the lowland tropical forests of Singapore. Plant Ecology and Evolution 143: 51-62. [PDF]

Neustupa, J., Řezáčová-Škaloudová, M. & Němcová, Y. (2010): Shape variation of the silica scales of Mallomonas kalinae (Mallomonadales, Synurophyceae) in relation to their position on the cell body. Nova Hedwigia, Beiheft 136: 33-42. [WEB]

Neustupa, J., Škaloud, P. & Šťastný, J. (2010): The molecular phylogenetic and geometric morphometric evaluation of Micrasterias crux-melitensis / M. radians species complex. Journal of Phycology 46: 703-714. [PDF]

Pažoutová, M., Škaloud, P. & Nemjová, K. (2010): Phylogenetic position of Ooplanctella planoconvexa gen. et comb. nova and Echinocoleum elegans (Oocystaceae, Trebouxiophyceae, Chlorophyta). Fottea 10: 75-82. [PDF]

Poulíčková, A., Veselá, J., Neustupa, J. & Škaloud, P. (2010): Pseudocryptic diversity versus cosmopolitanism in diatoms: a case study on Navicula cryptocephala Kütz. (Bacillariophyceae) and morphologically similar taxa. Protist 161: 353-369. [PDF]

Řezáčová-Škaloudová, M., Neustupa, J. & Němcová, Y. (2010): Effect of temperature on the variability of silicate structures in Mallomonas kalinae and Synura curtispina (Synurophyceae). Nova Hedwigia, Beiheft 136: 55-70. [WEB]

Savriama, Y., Neustupa, J. & Klingenberg, C.P. (2010): Geometric morphometrics of symmetry and allometry in Micrasterias rotata (Zygnemophyceae, Viridiplantae). Nova Hedwigia, Beiheft 136: 43-54. [WEB]

Skaloud, P. & Peksa, O. (2010): Evolutionary inferences based on ITS rDNA and actin sequences reveal extensive diversity of the common lichen alga Asterochloris (Trebouxiophyceae, Chlorophyta). Molecular Phylogenetics and Evolution 54: 36-46. [PDF]

Šťastný, J. (2010): Desmids (Conjugatophyceae, Viridiplantae) from the Czech Republic; new and rare taxa, distribution, ecology. Fottea 10: 1-74. [PDF]

Svoboda, D., Peksa, O. & Veselá, J. (2010): Epiphytic lichen diversity in Central European oak forests: Assessment of the effects of natural environmental factors and human influences. Environmental Pollution 158: 812-819. [PDF]

2009

Elias, M. & Archibald, J.M. (2009): Sizing up the genomic footprint of endosymbiosis. BioEssays 31: 1273-1279. [PDF]

Elias, M. & Archibald, J.M. (2009): The RJL family of small GTPases is an ancient eukaryotic invention probably functionally associated with the flagellar apparatus. Gene 442: 63-72. [WEB]

Eliáš, M. & Neustupa, J. (2009): Pseudomarvania, gen. nov. (Chlorophyta, Trebouxiophyceae), a new genus for “budding” subaerial green algae Marvania aerophytica Neustupa et Šejnohová and Stichococcus ampulliformis Handa. Fottea 9: 169-177. [PDF]

Elias, M., Patron, N.J. & Keeling, P.J. (2009): The RAB family GTPase Rab1A from Plasmodium falciparum defines a unique paralog shared by chromalveolates and Rhizaria. Journal of Eukaryotic Microbiology 56: 348-356. [WEB]

Fránková, M., Poulíčková, A., Neustupa, J., Pichrtová, M. & Marvan, P. (2009): Geometric morphometrics - a sensitive method to distinguish diatom morphospecies: a case study on the sympatric populations of Reimeria sinuata and Gomphonema tergestinum (Bacillariophyceae) from the River Bečva, Czech Republic. Nova Hedwigia 88: 81-95. [WEB]

Janatková, K. & Němcová, Y. (2009): Silica-scaled chrysophytes of Southern Bohemian water bodies, including Mallomonas conspersa Dürrschmidt with occurrence so far reported from Japan and New Zealand. Fottea 9: 93-99. [PDF]

Kovář, P., Rauch, O., Kubátová, A., Neustupa, J., Soldán, Z., Palice, Z., Dostál, P. & Štefánek, M. (2009): Ekologie obnovy narušených míst III. Cizorodé substráty v krajině. Živa 57: 116-119. [PDF]

Ma, L.J., Ibrahim, A.S., Skory, C., Grabherr, M.G., Burger, G., Butler, M., Elias, M. et al. (2009): Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication. PLoS Genetics 5: #e1000549. [PDF]

Machová-Černá, K., Neustupa, J. (2009): Spatial distribution of algal assemblages in a temperate lowland peat bog. International Review of Hydrobiology 94: 40-56. [PDF]

Němcová, Y. & Pichrtová, M. (2009): The rare species Synura lapponica (Synurophyceae) new to the Czech Republic, local vs. global diversity in colonial synurophytes. Biologia 64: 1070-1075. [PDF]

Nemjová, K. & Kaufnerová, V. (2009): New reports of Vaucheria species (Vaucheriales, Xanthophyceae, Heterokontophyta) from the Czech Republic. Fottea 9: 53-57. [PDF]

Neustupa, J., Černá, K. & Šťastný, J. (2009): Diversity and morphological disparity of desmid assemblages in Central European peatlands. Hydrobiologia 630: 243-256. [PDF]

Neustupa, J., Němcová, Y., Eliáš, M. & Škaloud, P. (2009): Kalinella bambusicola gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid Chlorella-like subaerial alga from Southeast Asia. Phycological Research 57: 159-169. [PDF]

Pichrtová, M. & Veselá, J. (2009): The silica-scaled chrysophytes of the Elbe Sandstone Region, Czech Republic. Fottea 9: 101-106. [PDF]

Píšková, A., Grygar, T., Veselá, J. & Oberhänsli, H. (2009): Diatom assemblage variations in the Aral Sea core C2/2004 over the past two millennia. Fottea 9: 333-342. [PDF]

Poulíčková, A., Neustupa, J., Špačková, J. & Škaloud, P. (2009): Distribution of epipelic diatoms in artificial fishponds along environmental and spatial gradients. Hydrobiologia 624: 81-90. [PDF]

Prášil, O., Bína, D., Medová, H., Řeháková, K., Zapomělová, E., Veselá, J. & Oren, A. (2009): Emission spectroscopy and kinetic fluorometry studies of the phototrophic microbial communities along the salinity gradient in the solar saltern evaporation ponds of Eilat, Israel. Aquatic Microbial Ecology 56: 285-296. [PDF]

Řeháková, K., Zapomělová, E., Prášil, O., Veselá, J., Medová, H. & Oren, A. (2009): Composition changes of phototrophic microbial communities along the salinity gradient in the solar saltern evaporation ponds of Eilat, Israel. Hydrobiologia 636: 77-88. [WEB]

Škaloud, P. (2009): Species composition and diversity of aero-terrestrial algae and cyanobacteria of the Boreč Hill ventaroles. Fottea 9: 65-80. [PDF]

Šťastný, J. (2009): The desmids of the Swamp Nature Reserve (North Bohemia, Czech Republic) and a small neighbouring bog: species composition and ecological condition of both sites. Fottea 9: 135-148. [PDF]

Veselá, J. (2009): Spatial heterogeneity and ecology of algal communities in an ephemeral sandstone stream in the Bohemian Switzerland National Park, Czech Republic. Nova Hedwigia 88: 531-547. [WEB]

Veselá, J. & Johansen, J. (2009): The diatom flora of ephemeral headwater streams in the Elbsandsteingebirge region of the Czech Republic. Diatom Research 24: 443-477. [PDF]

Veselá, J., Neustupa, J., Pichrtová, M. & Poulíčková A. (2009): Morphometric study of Navicula morphospecies (Bacillariophyta) with respect to diatom life cycle. Fottea 9: 307-316. [PDF]

2008

Eliáš, M. (2008): The guanine nucleotide exchange factors Sec2 and PRONE: Candidate synapomorphies for the Opisthokonta and the Archaeplastida. Molecular Biology and Evolution 25: 1526-1529. [PDF]

Eliáš, M. & Novotný, M. (2008): cpRAS: a novel circularly permuted RAS-like GTPase domain with a highly scattered phylogenetic distribution. Biology Direct 3: #21. [PDF]

Eliáš, M., Neustupa, J. & Škaloud, P. (2008): Elliptochloris bilobata var. corticola var. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccal green alga. Biologia 63: 787-794. [PDF]

Hašler, P., Štěpánková, J., Špačková, J., Neustupa, J., Kitner, M., Hekera, P., Veselá, J., Burian, J. & Poulíčková, A. (2008): Epipelic cyanobacteria and algae: a case study from Czech ponds. Fottea 8: 133-146. [PDF]

Machová, K., Elster, J. & Adamec, L. (2008): Xanthophyceaen assemblages during winter–spring flood: autecology and ecophysiology of Tribonema fonticolum and T. monochloron. Hydrobiologia 600: 155-168. [PDF]

Němcová, Y., Nováková, S. & Řezáčová-Škaloudová, M. (2008): Synura obesa sp. nov. (Synurophyceae) and other silica-scaled chrysophytes from Abisko (Swedish Lapland). Nova Hedwigia 86: 243-254. [WEB]

Neustupa, J. & Nemjová, K. (2008): Quantitative assessment of morphological variation of six Pseudococcomyxa strains by geometric morphometric descriptors. Fottea 8: 111-116. [PDF]

Neustupa, J. & Škaloud, P. (2008): Diversity of subaerial algae and cyanobacteria on tree bark in tropical mountain habitats. Biologia 63: 802-808. [PDF]

Neustupa, J., Šťastný, J. & Hodač, L. (2008): Temperature-related phenotypic plasticity in the green microalga Micrasterias rotata. Aquatic Microbial Ecology 51: 77-86. [PDF]

Peksa, O. & Škaloud, P. (2008): Changes in chloroplast structure in lichenized algae. Symbiosis 46: 153-160. [PDF]

Pichrtová, M. & Němcová, Y. (2008): Geometric morphometric analyses of silica-scale variation in four Mallomonas species (Synurophyceae, Stramenopiles). Nordic Journal of Botany 26: 77-82. [PDF]

Škaloud, P. & Pažoutová, M., Veselá, J. & Neustupa, J. (2008): Species composition of algae and cyanobacteria in biological soil crusts on natural substrata. Novitates Botanicae Universitatis Carolinae 19: 15-18. [PDF]

Škaloud, P. & Peksa, O. (2008): Comparative study of chloroplast morphology and ontogeny in Asterochloris (Trebouxiophyceae, Chlorophyta). Biologia 63: 869-876. [PDF]

Šťastný, J. (2008): Desmids from ephemeral pools and aerophytic habitats from the Czech Republic. Biologia 63: 884-890. [PDF]

Šťastný, J. (2008): Krásivky Přírodních rezervací "Chvojnov" a "Na Oklice". Acta Rerum Naturalium 4: 13-16. [PDF]

Šťastný, J. & Lenzenweger, R. (2008): Ein Nachtrag zur Zieralgenflora (Desmidiales, Zygnematophyceae) der Schwemm bei Walchsee in Nordtirol (Österreich). Phyton 48: 37-49. [PDF]

Šťastný, J. & Neustupa, J. (2008): Cosmarium gauthierae sp. nov. (Conjugatophyceae, Desmidiales) from an ephemeral pool in South-West Macedonia. Cryptogamie Algologie 29: 255-260. [PDF]

2007

Merchant, S.S., Prochnik, S.E., Vallon, O., Harris, E.H., Karpowicz, S.J., Witman, G.B. + 117 additional authors incl. Eliáš, M. (2007): The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318: 245-250. [PDF]

Neustupa, J., Eliáš, M. & Šejnohová, L. (2007): A taxonomic study of two Stichococcus species (Trebouxiophyceae, Chlorophyta) with a starch-enveloped pyrenoid. Nova Hedwigia 84: 51-63. [WEB]

Neustupa, J. & Němcová, Y. (2007): A geometric morphometric study of the variation in scales of Mallomonas striata (Synurophyceae, Heterokontophyta). Phycologia 46: 123-130. [PDF]

Neustupa, J. & Řezáčová, M. (2007): The genus Mallomonas (Mallomonadales, Synurophyceae) in several Southeast Asian urban water bodies - the biogeographic implications. Nova Hedwigia 84: 249-259. [PDF]

Neustupa, J. & Škaloud, P. (2007): Geometric morphometrics and qualitative patterns in the morphological variation of five species of Micrasterias (Zygnemophyceae, Viridiplantae). Preslia 79: 401-417. [PDF]

Nováková, S. (2007): Structure and dynamics of the algal flora in subalpine mires in the Krkonoše Mountains (Giant Mountains; Czech Republic). Nova Hedwigia 84: 441-458. [WEB]

Pichrtová, M., Řezáčová-Škaloudová, M. & Škaloud, P. (2007): The silica-scaled chrysophytes of the Czech-Moravian Highlands. Fottea 7: 43-48. [PDF]

Řezáčová, M. & Neustupa, J. (2007): Distribution of the genus Mallomonas (Synurophyceae) - Ubiquitous dispersal in microorganisms evaluated. Protist 158: 29-37. [PDF]

Škaloud, P. (2007): Chloroplasty řas v konfokálním mikroskopu. Živa 55: 3-5. [PDF]

Šťastný, J. (2007): Die Desmidiaceenflora von Pískovny Cep (Südböhmen). Novitates Botanicae Universitatis Carolinae 18: 53-62. [PDF]

Šubrt, D. (2007): Pinnularia ferrophila - tajemná řasa pramenů železitých kyselek Karlovarského kraje. Arnika 2007/2: 18-22.

2006

Hodač, L. & Veselá, J. (2006): Řasy rašelinišť Slavkovského lesa II. Arnika 2006/1: 11-18. [WEB]

Neustupa, J. (2006): Co je to geometrická morfometrika aneb morfologie znovu na scéně. Živa 54: 54-56. [PDF]

Neustupa, J. & Šťastný, J. (2006): The geometric morphometric study of Central European species of the genus Micrasterias (Zygnematophyceae, Viridiplantae). Preslia 78: 253-263. [PDF]

Řezáčová, M. (2006): Mallomonas kalinae (Synurophyceae), a new species of alga from northern Bohemia, Czech Republic. Preslia 78: 353-358. [PDF]

Škaloud, P. (2006): Variation and taxonomic significance of some morphological features in European strains of Klebsormidium (Klebsormidiophyceae, Streptophyta). Nova Hedwigia 83: 533-550. [WEB]

Škaloud, P., Řezáčová, M. & Ellegaard, M. (2006): Spatial distribution of phytoplankton in Spring 2004 along a transect in the eastern part of the North Sea. Journal of Oceanography 62: 717-729. [PDF]

Veselá, J. (2006): Benthic algal communities and their ecology in sandstone periodically desiccated brook in National Park Bohemian Switzerland (Czech Republic). Czech Phycology 6: 99-110. [PDF]

2005

Hodač, L. (2005): Řasy rašelinišť Slavkovského lesa I. Arnika 2005/2: 24-29. [WEB]

Kalina, T. (2005): New trends in the megasystems of Eukaryote (Review). Czech Phycology 5: 37-42. [PDF]

Neustupa, J. (2005): Investigations on the genus Phycopeltis (Trentepohliaceae, Chlorophyta) from South-East Asia, including the description of two new species. Cryptogamie Algologie 26: 229-242. [PDF]

Neustupa, J. (2005): Phenotypic plasticity of microalgal cultures in culture collections: a geometric morphometric appproach. Oceanological and Hydrobiological Studies 34: 97-107. [PDF]

Neustupa, J. & Hodač, L. (2005): Changes in shape of the coenobial cells of an experimental strain of Pediastrum duplex var. duplex (Chlorophyta) reared at different pHs. Preslia 77: 439-452. [PDF]

Nováková, S. (2005): Pseudocarteria corcontica, a new quadriflagellate species (Volvocales). Preslia 77: 453–457. [PDF]

Řezáčová, M. & Škaloud, P. (2005): Silica-scaled chrysophytes of Ireland. With an appendix: Geographic variation of scale shape of Mallomonas caudata. Nova Hedwigia, Beiheft 128: 101-124. [PDF]

Škaloud, P., Neustupa, J., Radochová, B., Kubínová, L. (2005): Confocal microscopy of chloroplast morphology and ontogeny in three strains of Dictyochloropsis (Trebouxiophyceae, Chlorophyta). Phycologia 44: 261-269. [PDF]

2004

Neustupa, J. (2004): Two new aerophytic species of the genus Podohedra Düringer (Chlorophyceae). Archiv für Hydrobiologie/ Algological Studies 112: 1-16. [PDF]

Neustupa, J. (2004): Krásivky - mikroskopické skvosty našich vod a mokřadů. Živa 52: 12-14. [PDF]

Neustupa, J. & Škaloud, P. (2004): Contribution to the knowledge of soil algae of two abandoned industrial sedimentation basins in Eastern Bohemia. In: Kovář, P. (ed.), Natural recovery of man-made deposits in landscape (Biotic interactions and ore/ash-slag artificial ecosystems). - pp. 188-192, Academia, Praha. [PDF]

Nováková, S. (2004): Spatial heterogeneity of the algal flora in subalpine mires in the eastern Krkonoše Mts (Giant Mountains; Czech Republic). Archiv für Hydrobiologie/ Algological Studies 112: 23-37. [PDF]

Nováková, S., Němcová, Y., Neustupa, J., Řezáčová, M. & Šejnohová, L. (2004): Silica-scaled chrysophytes in acid peat bogs of Bohemian Switzerland (Czech Republic) and Saxonian Switzerland (Germany). Nova Hedwigia 78: 507-515. [PDF]

Nováková, S., Řezáčová, M., Němcová, Y., Neustupa, J. & Kalina, T. (2004): Mallomonas actinoloma var. maramuresensis (Synurophyceae) - a new species in algal flora of the Czech Republic. Novitates Botanicae Universitatis Carolinae 17: 7-10. [PDF]

Nováková, S., Walne, P.L., Kalina, T. (2004): Contribution to the desmid flora of the Southern Appalachian Mountains (USA). Archiv für Hydrobiologie/ Algological Studies 112: 95-104. [WEB]

Řezáčová, M., Neustupa, J. & Šejnohová, L. (2004): Five species of Mallomonas (Synurophyceae) new to the algal flora of the Czech Republic. Preslia 76: 175-181. [PDF]

Řezáčová, M. & Škaloud, P. (2004): A contribution to the knowledge of the silica-scaled chrysophytes in eastern Hungary. Czech Phycology 4: 67-73. [PDF]

Škaloud, P. & Radochová, B. (2004): Confocal microscopy of the green-algal chloroplast. Czech Phycology 4: 183-190. [PDF]

2003

Němcová, Y. (2003): Detection of cell wall structural polysaccharides by cellulase-gold and chitinase-gold complexes. Czech Phycology 3: 3-36. [PDF]

Němcová, Y., Neustupa, J., Kalina, T. & Nováková, S. (2003): Silica-scaled chrysophytes of the Šumava National Park and the Třeboňsko UNESCO Biosphere Reserve (Southern Bohemia, Czech Republic). Nordic Journal of Botany 22: 375-383. [PDF]

Němcová, Y., Neustupa, J., Kalina, T. & Nováková, S. (2003): Silica-scaled chrysophytes of the Czech Republic. Acta Universitatis Carolinae - Biologica 47: 285-346.

Neustupa, J. (2003): The genus Phycopeltis (Trentepohliales, Chlorophyta) from tropical Southeast Asia. Nova Hedwigia 76: 487-505. [PDF]

Neustupa, J. (2003): Šupinaté zlativky - bičíkovci ve skleněném brnění. Živa 51: 57-58. [WEB]

Neustupa, J. & Albrechtová, J. (2003): Aerial algae on spruce needles in the Krušné hory Mts., Czech Republic. Czech Phycology 3: 161-167. [PDF]

Neustupa, J. & Šejnohová, L. (2003): Marvania aerophytica sp. nov., a new subaerial green alga. Biologia 58: 503-507. [PDF]

Nováková, S. (2003): Algoflóra rašelinišť Českosaského Švýcarska. Czech Phycology 3: 71-78. [PDF]

Nováková, S. (2003): Ecological distribution patterns of desmid species in subalpine regions of the Krkonoše Mountains (Czech Republic). Biologia 58: 697-700.

Pfannenschmid, F., Wimmer, V.C., Rios, R.M., Geimer, S., Haller, K., Němcová, Y. & Mages, W. (2003): Chlamydomonas DIP13 and human NA14: a new class of proteins associated with microtubule structures is involved in cell division. Journal of Cell Science 116: 1449-1462. [PDF]

Šejnohová, L. (2003): Sinice a řasy slepých ramen Vltavy v I. zóně Šumavského Národního parku "Vltavský luh". Czech Phycology 3: 53-70. [PDF]

Šejnohová, L., Škaloud, P., Neustupa, J., Nováková, S., Řezáčová, M. & Ošlejšková, L. (2003): Algae and cyanoprokaryotic species from peat bog, streams, ponds and aerial biotopes in the region of South Šumava Mts. Czech Phycology 3: 41-52. [PDF]

2002

Neustupa, J. (2002): An easy method for light microscopic distinguishing of xanthophycean and eustigmatophycean strains. Czech Phycology 2: 43-46. [PDF]

Neustupa, J., Nováková, S., Šejnohová, L., Škaloud, P. & Řezáčová, M. (2002): Algae from the aquatic, peat bog and aerial biotopes in the tributary of Křemelná river in Šumava National Park. Czech Phycology 2: 47-61. [PDF]

Nováková, S. (2002): Algal flora of subalpine peat bog pools in the Krkonoše Mts. Preslia 74: 45-56. [PDF]

Nováková, S. (2002): Pseudodendromonas vlkii - poutník po systému. Czech Phycology 2: 33-37. [PDF]

2001

Kalina, T. (2001): Původ chloroplastů a zařazení řasových oddělení do systému organismů. Czech Phycology 1: 1-4. [PDF]

Kalina, T., Walne, P. & Houk, V. (2001): Floristic notes on plankton algae of Norris Lake (Tennessee, USA). Preslia 73: 121-126.

Němcová, Y., Kalina, T., Neustupa, J. & Nováková, S. (2001): Silica-scaled chrysophytes of the Krkonoše Mountains (Czech Republic). Archiv für Hydrobiologie/ Algological Studies 101: 97-108. [WEB]

Neustupa, J. (2001): Soil algae from marlstone-substratum based biotopes in the Nature park Džbán (Central Bohemia, Czech Republic) with special attention to the natural treeless localities. Archiv für Hydrobiologie/ Algological Studies 101: 109-120. [PDF]

Neustupa, J. (2001): Aerofytické řasy tropického deštného lesa - zkušenosti z Malajského poloostrova. Czech Phycology 1: 31-35. [PDF]

Neustupa, J. & Němcová, Y. (2001): Morphological and taxonomic study of three terrestrial eustigmatophycean species. Nova Hedwigia, Beiheft 123: 373-386. [PDF]

Neustupa, J., Němcová, Y. & Kalina, T. (2001): Silica-scaled Chrysophytes of Southern Bohemia and Českomoravská vrchovina (Czech-Moravian Highlands, Czech Republic). Archiv für Hydrobiologie/ Algological Studies 102: 23-34. [WEB]

2000

Kalina, T., Němcová, Y. & Neustupa, J. (2000): Silica-scaled chrysophytes of the Czech Republic 1. District Česká Lípa (Nothern Bohemia) and part of the Central Bohemia. Archiv für Hydrobiologie/ Algological Studies 96: 29-47. [WEB]

Němcová, Y. & Kalina, T. (2000): Cell wall development, microfibril and pyrenoid structure in type strains of Chlorella vulgaris, C. kessleri, C. sorokiniana compared with C. luteoviridis (Trebouxiophyceae, Chlorophyta). Archiv für Hydrobiologie/ Algological Studies 100: 95-105. [PDF]

Němcová, Y., Kalina, T. & Neustupa, J. (2000): Chrysomonády a slunivky s křemičitými šupinami montánních a subalpinských rašelinišť Krkonoš. Opera Corcontica 37: 334-340. [PDF]

Němcová, Y., Kalina, T., Neustupa, J. & Nováková, S. (2000): Scale-bearing chrysophyte Mallomonas calceolus Bradley a new record from Czech Republic. Novitates Botanicae Universitatis Carolinae 13: 7-11. [PDF]

Neustupa, J., Němcová, Y. & Kalina, T. (2000): Mallomonas pumilio var. pumilio - a new species in algal flora of Czech Republic. Novitates Botanicae Universitatis Carolinae 14: 7-11. [PDF]

Nováková, S. (2000): Řasy krkonošských rašelinišť. Opera Corcontica 37: 341-346. [PDF]

1999

Němcová, Y. (1999): The fine structure of the xanthophycean alga Bumilleriopsis filiformis. Acta Universitatis Carolinae - Biologica 43: 67-76.

1998

Neustupa, J. (1998): Prasiola crispa (Lightfoot) Meneghini in King`s preserve in Prague. Novitates Botanicae Universitatis Carolinae 12: 35-39. [PDF]